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1,000 results • Page
3 of 20
Sort: replies
Rank
Views
Votes
Replies
1
vote
10
replies
785
views
Do monoclonal antibodies have a blocking effect?
block
antibody
offtopic
updated 6 weeks ago by
Jeremy
▴ 840 • written 6 weeks ago by
jinyu
▴ 10
1
vote
10
replies
2.0k
views
Weird results for scRNA-seq
scRNA-seq
GEO
updated 9 months ago by
Giuseppe
▴ 70 • written 9 months ago by
tujuchuanli
▴ 100
7
votes
10
replies
1.5k
views
Ubuntu 20.04 Crash
Ubuntu
updated 7 months ago by
Ram
40k • written 20 months ago by
bala
• 0
2
votes
10
replies
1.4k
views
R-studio freezes error
RStudio
offtopic
updated 11 months ago by
Ram
40k • written 11 months ago by
Amr
▴ 140
4
votes
10
replies
3.8k
views
TCGA normalized count data of 1000 samples for DGE
RNA-Seq
TCGA
updated 8 months ago by
Ram
40k • written 8.4 years ago by
David_emir
▴ 470
3
votes
10
replies
550
views
STAR index not working
STAR
RNA-Seq
12 days ago by
camillab.
▴ 140
0
votes
9
replies
893
views
Error in DESeqDataSetFromHTSeqCount
DESeq2
RNA-seq
HTseq
updated 10 months ago by
swbarnes2
13k • written 10 months ago by
abhay.kanodia
▴ 10
0
votes
9
replies
4.9k
views
Calculating FPKM and TPM by hand from htseq-count output?
RNA-Seq
rna-seq
htseq
FPKM
TPM
updated 8 weeks ago by
ATpoint
77k • written 4.5 years ago by
Joel Wallenius
▴ 180
0
votes
9
replies
1.0k
views
Chipseq analysis on repeat genes
galaxy
repeatmasker
ChIP-seq
repeat-elements
ATAC-seq
updated 7 days ago by
rfran010
▴ 840 • written 19 days ago by
pb11
▴ 10
0
votes
9
replies
3.1k
views
MATLAB Volcano Plot
Microarray
r
RNA-Seq
genome
updated 6 months ago by
Ram
40k • written 5.6 years ago by
bikash2510
▴ 30
6
votes
9
replies
5.0k
views
Best Possible set of Python interview questions for Bioinformatics, that a recruiter can ask?
python
updated 6 months ago by
Ram
40k • written 8.5 years ago by
gaurav.singh
▴ 10
2
votes
9
replies
2.2k
views
SAM file quality check without converting into BAM
Alignment
SAM
updated 6 months ago by
Ram
40k • written 4.4 years ago by
vaish01kv
• 0
3
votes
9
replies
724
views
Estimate sizes of repeats in a especific Gene
CGG
Fragile-X
4 months ago by
Rafael
▴ 10
11
votes
9
replies
2.3k
views
samtools piping with awk/ bash commands -> Wonky things happen!!!
bash
samtools
awk
updated 9 months ago by
Ram
40k • written 8.3 years ago by
QVINTVS_FABIVS_MAXIMVS
★ 2.5k
1
vote
9
replies
1.3k
views
kallisto bootstrap / condo installation problem
hfd5
kallisto
condo
updated 5 months ago by
dsull
★ 4.8k • written 5 months ago by
micecanfly
▴ 10
3
votes
9
replies
864
views
Mutation filtering based on Lanes
ngs
calling
Variant
lanes
updated 11 months ago by
LChart
3.4k • written 11 months ago by
Gama313
▴ 120
0
votes
9
replies
872
views
grep multiple lines form file
shell-script
grep
updated 3 months ago by
Ram
40k • written 3.4 years ago by
harry
▴ 30
0
votes
9
replies
5.5k
views
PLINK does not uncompress GZ file automatically, why?
plink
gz
SNP
updated 11 months ago by
Ram
40k • written 8.1 years ago by
odeta.xjd
• 0
0
votes
9
replies
1.8k
views
Microarray analysis in R - target.txt,file,Sample info
R
updated 6 months ago by
Ram
40k • written 2.0 years ago by
bioinformatics
▴ 20
0
votes
9
replies
1.2k
views
Running ANNOVAR table_annovar.pl. Error convert2annovar.pl: not found
ANNOVAR
perl
Annotation
VCF
9 months ago by
vvs.hazia
▴ 10
3
votes
9
replies
503
views
Understanding this analysis pipeline
reads
updated 3 months ago by
Ram
40k • written 3 months ago by
artemchuki
• 0
0
votes
9
replies
595
views
User's choice for three- or single- letter amino acids in reading frames
python
updated 5 months ago by
Ram
40k • written 5 months ago by
kianamajd45
• 0
6
votes
9
replies
1.4k
views
Error when runing Bowtie2: (ERR): bowtie2-align exited with value 1
BAM
Bowtie
updated 4 months ago by
Ram
40k • written 8 months ago by
luzglongoria
▴ 50
0
votes
9
replies
1.3k
views
Differential gene expression analysis with no replicates using edgeR
edgeR
RNA-seq
DEG
updated 9 months ago by
Ram
40k • written 10 months ago by
Apex92
▴ 270
1
vote
9
replies
1.0k
views
Couldn't get a file descriptor referring to the console multiqc
multiqc
updated 4 months ago by
Ram
40k • written 15 months ago by
smithkthedale
▴ 10
0
votes
9
replies
218
views
Deseq2 error
R
deseq2
3 hours ago by
sgadila
• 0
5
votes
9
replies
3.7k
views
Combining all biological replicates
RNA-Seq
Cuffdiff
updated 11 months ago by
Ram
40k • written 8.2 years ago by
melati
▴ 10
6
votes
9
replies
2.4k
views
How to analyze the scRNA seq Fastq files from NCBI
SRAtool
Cellranger
NCBI
updated 3 months ago by
Ram
40k • written 21 months ago by
aimanbarki
▴ 20
0
votes
9
replies
639
views
gene id
gene-id
NCBI
updated 3 months ago by
GenoMax
135k • written 3 months ago by
safeassli
• 0
5
votes
9
replies
2.6k
views
differential expression analysis tools for single end reads
rna-seq
next-gen
updated 11 months ago by
Ram
40k • written 8.2 years ago by
mike
▴ 90
0
votes
9
replies
4.1k
views
Merge BAM files for a lane with multiplexed samples.
multiplexing
samtools
baserecalibrator
gatk
updated 9 months ago by
Ram
40k • written 8.3 years ago by
Timothée Flutre
▴ 20
0
votes
9
replies
1.2k
views
WGCNA-1st step-weighted correlation network for labelfreequantified proteomics data
network
proteomics
WGCNA
correlation
updated 11 months ago by
andres.firrincieli
3.5k • written 11 months ago by
anusha
• 0
3
votes
9
replies
2.0k
views
Blast+ remote database names
blast
remote
databases
Blastplus
updated 11 weeks ago by
GenoMax
135k • written 21 months ago by
Komalharini
• 0
0
votes
9
replies
3.3k
views
Viral integration with RNA-seq data
ngs
RNA-seq
updated 6 months ago by
Ram
40k • written 6.0 years ago by
KVC_bioinfo
▴ 590
4
votes
9
replies
881
views
Aligning fastq files using STAR
RNA
loop
STAR
HG
Sequencing
10 months ago by
kcarey
• 0
0
votes
9
replies
3.0k
views
The soapfuse running problem
soapfuse
updated 9 months ago by
Ram
40k • written 8.4 years ago by
syxbestmayer
▴ 10
7
votes
9
replies
1.1k
views
Tools to check the length of isoforms in reference transcript
transcript
histogram
isoform
11 months ago by
Jjbox
▴ 40
1
vote
9
replies
775
views
Trying to edit VCF file
VCF
R
bcftools
snpsaurus
updated 4 months ago by
Ram
40k • written 4 months ago by
peavy
• 0
0
votes
9
replies
1.2k
views
how to get fastq file from cellranger?
Cellranger
mkfastq
updated 9 months ago by
GenoMax
135k • written 9 months ago by
Info.shi
▴ 30
2
votes
9
replies
525
views
Calculation of TMB on gene level
genomics
updated 7 days ago by
svp
▴ 590 • written 8 days ago by
smrutimayipanda
▴ 20
0
votes
9
replies
820
views
Sum the values based on the variant names and give the result in stats format
coding
updated 7 months ago by
Ram
40k • written 7 months ago by
smrutimayipanda
▴ 20
3
votes
9
replies
3.4k
views
fastqc html file
fastqc
updated 7 months ago by
Ram
40k • written 22 months ago by
Cihan
• 0
0
votes
9
replies
1.2k
views
How to resolve a ValueError: Multiple 'HD' Lines are not permitted when I run Circle-Map on a Linux system
Circle-Map
ValueError
11 months ago by
liyuguo
• 0
1
vote
9
replies
2.8k
views
build databses for genome using snpEff
annotation
SNP
snpEff
updated 6 weeks ago by
nehakhilwani18
• 0 • written 5.2 years ago by
StudentBio
• 0
1
vote
9
replies
1.3k
views
Error after installation of AGAT
Perl
AGAT
8 months ago by
L_bioinfo
• 0
1
vote
9
replies
732
views
gene annotation
gtf
gene-annotation
updated 4 months ago by
Ram
40k • written 4 months ago by
ahmad
• 0
4
votes
9
replies
7.9k
views
bcftools consensus command
vcf
bcftools
updated 6 months ago by
Ram
40k • written 3.7 years ago by
Begonia_pavonina
▴ 110
2
votes
9
replies
578
views
Read length for single -ended RNA seq data analysis
read-length
fastq
updated 9 weeks ago by
Ram
40k • written 9 weeks ago by
vinaya
• 0
1
vote
9
replies
2.8k
views
bam to fasta error using samtools
fasta
bam
updated 6 months ago by
Ram
40k • written 6.5 years ago by
christacaggiano
▴ 60
7
votes
8
replies
1.8k
views
How can we time a recent gene duplication event using (neutral?) DNA mutations as molecular clock?
molecular-clock
gene-duplication
phylogeny
updated 8 months ago by
Ram
40k • written 8.4 years ago by
xiaofeng.dong12
▴ 20
1,000 results • Page
3 of 20
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GSEA with GO and KEGG datasets
Answer: Exporting DEGs obtained from DESeq2
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Answer: How Do I Convert From Bed Format To Gff Format?
by
alejandrogzi
▴ 30
I recently developed [bed2gff](https://github.com/alejandrogzi/bed2gff) to quickly convert .bed files to a gff3 format, a tool written in R…
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by
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Writing a solution for anyone interested. The issue stems from a dosage error, some variant contains only heterozygous individuals and no h…
Answer: The Biostar Handbook. A bioinformatics e-book for beginners.
by
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Great book! I love using it to help my mentees to learn bioinformatics better. It would be also fantastic to compile all other necessary Pr…
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads
by
langziv
▴ 50
Thanks. I'll try.
Comment: How to get sample names and genotype for SNP in multi-sample VCF file
by
avelarbio46
▴ 30
Hi! I'm trying to parallelize your code (to run on a bunch of files), but it is not working because of multiple processes spawning. Do you …
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads
by
GenoMax
135k
> so I don't think the genome size is available. Perhaps not for your specific strain but plenty of other Kpn genomes are available and th…
Comment: Kimura% of calcDivergenceFromAlign output
by
睿紘
• 0
For additional information, "Coverage for each repeat class and divergence (Kimura)" is also the result from calcDivergenceFromAlign.pl
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads
by
langziv
▴ 50
By the way, I run Rockhopper on the untrimmed files, and the full match percentage grew to 20%-30%, and there are 1552 transcripts in the u…
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads
by
langziv
▴ 50
Here are the total bases in 4 fastq files (after adapter removal): 1,027,852,411, 1,041,895,083, 1,121,786,520, 1,299,721,929. I just rem…
Comment: Understanding mother and father alleles in VCF file
by
c.
• 0
actually they didn't tell me which relatives were from mother side and which from father side, you are right. But how can you find related …
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads
by
GenoMax
135k
Correct. Data that went into the assembly.
Comment: Rockhoppper - Suspiciously low percentage of perfectly aligned reads
by
langziv
▴ 50
Total bases (number of reads * read length) should be calculated after removal of adapters, right?
Comment: Getting BLAST to give output whilst running
by
Ken
• 0
If I understand correctly, Blast can tell you how many results it has gotten but it can't tell you how many it is going to get, therefore i…
Comment: Understanding mother and father alleles in VCF file
by
Ram
40k
I don't understand your logic. You don't know what phasing is but are confident it is not required, and your proof is that relatives were d…
Comment: Understanding mother and father alleles in VCF file
by
c.
• 0
It's from Nebula genomics. It must be possible to deduce parental alleles, since I converted the VCF file into a Myheritage VCF file and th…
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