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Recent Replies
Comment: Help with running ATAC using Encode pipeline
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Thank you for the instruction! I see the beside json file we also have input file which I am confused. Because we have already defined the …
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I've been faced with similar issues in the past. Both option 1 and 2 seem useful. You can also treat your data as accidental metagenomic …
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-s, --stable
stabilize sort by disabling last-resort comparison
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> Running the same sequence on the blast web server took 10 seconds
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Yes, I know - but that doesn't answer the question.
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Thank you for the explanation! I managed to get diamond to work, but I'm having trouble getting it to run faster than blast. For a single t…
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Please use `AGAT`: https://agat.readthedocs.io/en/latest/topological-sorting-of-gff-features.html
Comment: convert data frame with character column to data frame with integer column
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dear @Basti : As you said in order to clarify my issue I edit question box with give an example. I will be grateful if you take a look at …
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Those are your options with the `sort` utility - you can either keep the existing order or re-order by coordinate. If you're looking for a …
Comment: How to sort gff3 according to chromosome order?
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BioinfoBee
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using sort -k1,1 doesn't keep the order of child features of each gene in output.
Comment: How to sort gff3 according to chromosome order?
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You're sorting by chromosome AND co-ordinates. Try just `sort -k1,1`
Comment: How to sort gff3 according to chromosome order?
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BioinfoBee
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it does sort but not able to keep the child features (mRNA, CDS, exon) in proper order. For example, I can sort using: sort -k1,1 -k4,4n -k…
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