1
vote
5
replies
232
views
0
votes
2
replies
878
views
0
votes
2
replies
212
views
0
votes
1
reply
169
views
updated 7 days ago by
Ram
40k
•
written 7 days ago by
oduduabasi.isaiah
•
0
3
votes
2
replies
202
views
updated 6 days ago by
Basti
★
1.7k
•
written 7 days ago by
epianalysis
•
0
0
votes
1
reply
152
views
0
votes
0
replies
124
views
7 days ago by
Fabio_bie88
•
0
0
votes
1
reply
1.7k
views
updated 7 days ago by
Ram
40k
•
written 7.3 years ago by
gerrychang1985
▴
40
0
votes
6
replies
288
views
6 days ago by
biology_inform
▴
40
0
votes
1
reply
127
views
2
votes
9
replies
499
views
updated 6 days ago by
svp
▴
590
•
written 7 days ago by
smrutimayipanda
▴
20
0
votes
0
replies
118
views
1
vote
2
replies
165
views
0
votes
0
replies
118
views
2
votes
4
replies
280
views
7 days ago by
camillab.
▴
140
1
vote
5
replies
303
views
0
votes
1
reply
212
views
updated 6 days ago by
barslmn
★
1.9k
•
written 9 days ago by
smrutimayipanda
▴
20
4
votes
6
replies
386
views
0
votes
0
replies
157
views
2
votes
4
replies
315
views
0
votes
0
replies
163
views
updated 9 days ago by
4galaxy77
2.8k
•
written 9 days ago by
shakyaram079
•
0
0
votes
2
replies
281
views
1
vote
2
replies
264
views
updated 7 days ago by
Zhenyu Zhang
▴
980
•
written 10 days ago by
Tahsin
•
0
0
votes
0
replies
164
views
updated 10 days ago by
Ram
40k
•
written 10 days ago by
Ahmed.waraky
▴
10
2
votes
7
replies
689
views
updated 11 hours ago by
Ram
40k
•
written 10 days ago by
Can Abdullah
•
0
1
vote
3
replies
245
views
0
votes
1
reply
222
views
0
votes
0
replies
352
views
updated 10 days ago by
Pierre Lindenbaum
157k
•
written 10 days ago by
nonaddldy
▴
10
2
votes
5
replies
386
views
0
votes
0
replies
178
views
11 days ago by
Ahmed
•
0
5
votes
7
replies
447
views
0
votes
0
replies
170
views
0
votes
0
replies
174
views
0
votes
1
reply
219
views
0
votes
5
replies
470
views
updated 7 days ago by
Ram
40k
•
written 11 days ago by
iftikharmaryam123
•
0
0
votes
0
replies
188
views
11 days ago by
juliviglino
•
0
0
votes
1
reply
213
views
3
votes
10
replies
542
views
2
votes
3
replies
299
views
updated 12 days ago by
Ram
40k
•
written 12 days ago by
txema.heredia
▴
80
0
votes
1
reply
177
views
0
votes
13
replies
604
views
1
vote
3
replies
256
views
updated 12 days ago by
GenoMax
134k
•
written 12 days ago by
anika.john
•
0
0
votes
0
replies
123
views
2
votes
4
replies
334
views
1
vote
1
reply
208
views
0
votes
2
replies
246
views
0
votes
1
reply
197
views
updated 12 days ago by
Jordan M Eizenga
▴
360
•
written 13 days ago by
cfourps
▴
10
0
votes
3
replies
273
views
0
votes
3
replies
285
views
Recent Votes
Recent Locations •
All
United States, just now
Switzerland, 2 minutes ago
United States, 4 minutes ago
United States, 8 minutes ago
Australia, 10 minutes ago
United States, 23 minutes ago
Australia, 26 minutes ago
Recent Awards •
All
Popular Question to
jachimowicz9002
▴
10
Popular Question to
pb11
▴
10
Popular Question to
Antonio R. Franco
★
5.1k
Popular Question to
bioinfo
▴
110
Scholar to
Istvan Albert
98k
Recent Replies
Answer: How to assign gene names after kallisto when I add GFP?
by
dsull
★
4.8k
kallisto relies on a transcriptome index, so simply add the GFP sequence to the transcriptome FASTA file and index it. The name in the outp…
Comment: How to convert data in r?
by
Ram
40k
While `%>%` is indeed exported by magrittr, `dplyr` is the most popular package to use them. dplyr imports magrittr, it does not define the…
Comment: Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, r
by
suragnair
•
0
So long as one's pipeline is consistent throughout, the shift is +4/-4 regardless of 1-based or 0-based indexing. But you're right that shi…
Comment: Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, r
by
suragnair
•
0
Each fragment is two cuts (one on + and - strands), which you capture if you do paired-end sequence. Conversely, each cut gives rise to two…
Comment: How to convert data in r?
by
kalavattam
▴
190
Ah, thanks for pointing that out.
`%>%` is made available with `magrittr`—are pipes in the `dplyr` namespace too? I wasn't aware of that.
…
Answer: Generating a 3D model from 2D slices of a nucleus
by
LChart
3.4k
This question doesn't fit in nicely with the other set of questions (which tend to focus more on omics). However this sounds an awful lot l…
Answer: GOSt Plot
by
bk11
★
1.3k
> How do I change the point size on the plot? I know how to do this in
> ggplot, but can't find a command here to do this, even though the…
Answer: The RNA velocity are opposite in 'dynamical' and 'stochastic' modes.
by
james.hawley
▴
40
Conflicting directions in RNA velocity analysis is not uncommon.
[Gorin _et al._, 2022](https://journals.plos.org/ploscompbiol/article?id=…
Comment: counting from a single BAM file with multiple samples
by
LChart
3.4k
I think you can use UMI-tools to do this with something like `--extract_method=regex --bc-pattern=(?P<cell_1>8)$ --ignore-umi`. However I d…
Comment: counting from a single BAM file with multiple samples
by
bk11
★
1.3k
You can do sth like that has been discussed [here][1].
[1]: https://www.10xgenomics.com/resources/analysis-guides/tutorial-navigating-…
Comment: counting from a single BAM file with multiple samples
by
dr-device
•
0
Yes, its from a plate-based protocol but with literally only 20 cells. Im therefore planning on just using edgeR for my analysis rather tha…
Comment: Help with error running velocyto
by
bk11
★
1.3k
Sure thing! If it worked, please accept the answer.
Comment: Help with error running velocyto
by
Chris
▴
200
The tutorial doesn't mention we need to load `samtools`. Thank you so much! You are awesome. It is running now.
Comment: How to extract the first and last 2 nt from multiple sequences in a FASTA file?
by
Ram
40k
Accept this answer to mark the post as solved, and please don't ask the same question again.
Comment: extract first and last n bp from fasta file from multiple fasta file in R
by
Ram
40k
OP asked [the exact same question 2 years ago][1] and got the seqkit subseq answer from shenwei himself. Really odd behavior.
[1]: https…
Traffic: 1237 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6