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233 results • Page
2 of 5
Sort: Rank
Rank
Views
Votes
Replies
2
votes
5
replies
215
views
fastqc: Per base sequence content
illumina
metagenomic
fastqc
2 days ago by
khoojj
• 0
0
votes
0
replies
100
views
A question about Bioinformatik analysis and experimental design / comparing 2 experiments
DEseq2
Batch-effect
updated 2 days ago by
Ram
38k • written 2 days ago by
Frederik
• 0
0
votes
0
replies
107
views
Input data for LIMMA: unnormalised or vsn or other?
lima
normalisation
vns
2 days ago by
Sebastian Hesse
▴ 320
0
votes
0
replies
94
views
question of exonerate output
protein
gff
exonerate
annotation
2 days ago by
TN
• 0
0
votes
0
replies
112
views
Mis-paired primers
amplicon
primers
Mis-paired
3 days ago by
Sara
▴ 10
0
votes
0
replies
110
views
show amplicon like exon in UCSC/IGV
amplicon
3 days ago by
Sara
▴ 10
0
votes
2
replies
188
views
scATAC-seq workflow
Signac
scATAC-seq
3 days ago by
bioinformatics.girl
• 0
0
votes
0
replies
135
views
Set Y limits for ggplot with sec.axis
rstudio
ggplot
3 days ago by
JirMan
• 0
0
votes
1
reply
143
views
Filter InterProScan output for a specific function
interproscan
annotation
updated 2 days ago by
jv
▴ 800 • written 3 days ago by
Purger
• 0
0
votes
1
reply
164
views
f-index in treemix
treemix
introgression
f-index
3 days ago by
kk.mahsa
▴ 140
0
votes
2
replies
312
views
Network analysis for two Factors
score
protein
network
chip-seq
analysis
3 days ago by
Ankit
▴ 390
0
votes
5
replies
393
views
ceres score in crispr screen
ceres
crispr
ngs
2 days ago by
edus_bioinfo
▴ 20
0
votes
0
replies
245
views
Issues Using DMRcate and rmSNPandCH
DMRcate
R
2 days ago by
Indira
• 0
0
votes
0
replies
148
views
Statistical test on two phylogenetically remote groups
phylogeny
ANOVA
4 days ago by
liorglic
★ 1.1k
0
votes
0
replies
179
views
Sequence Homology locator
Sequence
Homology
Genome
finder
4 days ago by
himalayan_yeti
• 0
2
votes
4
replies
336
views
How to find the most frequent alternative-splicing event from DEXSEQ data?
DESEQ
RNA-SEQ
DEXSEQ
2 days ago by
STARDUST
• 0
1
vote
4
replies
380
views
SNP calling
SNP
GATK
updated 16 hours ago by
dthorbur
▴ 270 • written 4 days ago by
abozorgmehr1985
▴ 10
0
votes
0
replies
182
views
gistic- overlapp
CNV
GISTIC
TCGA
4 days ago by
Hanie
• 0
0
votes
0
replies
195
views
Protocol to detect chromosomal ploidy from WGS VCF?
wgs
ploidy
5 days ago by
optimistsso4co3
▴ 100
0
votes
0
replies
181
views
SpliceAi same variant , different score
SpliceAi
updated 5 days ago by
Pierre Lindenbaum
152k • written 5 days ago by
vvasta
• 0
0
votes
0
replies
185
views
GSEA multiple group analysis
gsea
single-cell
5 days ago by
piotto
▴ 10
0
votes
2
replies
275
views
cellranger-arc mkfastq Error: bcl2fastq was killed with signal -11
bcl2fastq
cellranger-arc
mkfastq
cellranger
5 days ago by
Yingying
• 0
0
votes
0
replies
197
views
Unrooted consensus tree [Bio.Phylo]
consensus
phylo
biopython
5 days ago by
Jimpix
▴ 10
0
votes
6
replies
447
views
PLINK2 selecting variants based on INFO score
plink2
2 days ago by
m.c.roozen
• 0
0
votes
0
replies
159
views
What is the difference between gseapy.prerank and gseapy.gsea?
gseapy
gsea
5 days ago by
bioinfo
▴ 20
3
votes
6
replies
360
views
Which file and data structure is used to create volcano plot from scRNA-Seq experiment?
plot
Volcano
5 days ago by
Chris
▴ 60
1
vote
1
reply
187
views
bwa mem duration?
performance
mapping
bwa
updated 5 days ago by
ATpoint
69k • written 5 days ago by
lacb
▴ 30
2
votes
4
replies
308
views
Gene ontology with locus tags
ontology
locus
gene
tags
updated 1 day ago by
dthorbur
▴ 270 • written 5 days ago by
sea.joson
▴ 10
0
votes
7
replies
370
views
Clustering and dynamic tree cutting
dynamicTreeCut
Clustering
data
RNAseq
cutreeDynamic
updated 1 day ago by
andres.firrincieli
3.1k • written 5 days ago by
harish
• 0
0
votes
6
replies
338
views
STAR is running but .sam file size does not increase after hours mapping
STAR
RNA-seq
mapping
SAM
updated 5 days ago by
GenoMax
125k • written 5 days ago by
luzglongoria
▴ 40
0
votes
5
replies
458
views
HTSeq error processing GFF file
HTSeq
GFF
GTF
updated 4 days ago by
barslmn
★ 1.3k • written 5 days ago by
ibq.enriquepola
• 0
0
votes
0
replies
157
views
which tool to use for Transposon structure finding CENSOR or repeat masker ??
transposon
DNA
repeat
CENSOR
masker
5 days ago by
manaswiniparija3
▴ 10
0
votes
0
replies
157
views
scATAC merging of files
Signac
scATAC-seq
6 days ago by
bioinformatics.girl
• 0
0
votes
0
replies
168
views
what does ALT ID DUP refer to when ALT ID for copy number are already specified
ALT
ID
CNV
VCF
6 days ago by
anubratadas
▴ 20
0
votes
0
replies
192
views
How to use gseapy after scanpy?
gsea
single
cell
enrichR
gseapy
5 days ago by
bioinfo
▴ 20
0
votes
0
replies
167
views
VNTR genotyping
NGS
VNTR
genotyping
6 days ago by
Genotepes
▴ 950
0
votes
0
replies
132
views
Which AF column do I use from TCGA data in maftools
vcf2maf
sequencing
genome
WES
maf
6 days ago by
CH1374
▴ 10
0
votes
0
replies
130
views
Chloroplast genome phylogenetic analysis
Inverted
region
Chloroplast
genome
Phylogenetic
analysis
SSC
6 days ago by
a.bibek52
• 0
0
votes
0
replies
132
views
mVISTA annotation
alignment
Annotation
S-LAGAN
mVISTA
6 days ago by
a.bibek52
• 0
4
votes
2
replies
229
views
Analyzing bulk RNA-seq
RNAseq
updated 6 days ago by
swbarnes2
13k • written 6 days ago by
Zaid
• 0
1
vote
13
replies
466
views
RNAseq for DE purpose
RNAseq
updated 6 days ago by
swbarnes2
13k • written 6 days ago by
m.habib
• 0
0
votes
0
replies
117
views
Identifying off-target mutation frequency in Bacterial genomes
dCas9-deaminase
off-target
SNPS
WGS
dCas9
6 days ago by
pd378
• 0
0
votes
0
replies
93
views
SVA correction reduces ability to detect genes as differential expressed?
effects
RNAseq
expression
batch
SVA
gene
6 days ago by
MB
▴ 50
0
votes
7
replies
408
views
CoveragePlot in Signac from MACS2 Object
Signac
scATAC-seq
updated 5 days ago by
seidel
10k • written 6 days ago by
bioinformatics.girl
• 0
0
votes
1
reply
167
views
Remove duplicates in multifasta, where entries are paired
bash
python
updated 5 days ago by
dthorbur
▴ 270 • written 6 days ago by
SaltedPork
▴ 170
3
votes
3
replies
240
views
snakemake Unexpected keyword bam in rule definition
snakemake
updated 2 days ago by
Wayne
★ 1.6k • written 6 days ago by
Aidand
• 0
0
votes
0
replies
88
views
Normalize Together Total RNA-SEQ vs Ampliseq protocols reads
RNA-seq
deseq2
ampliseq
ion-torrent
R
6 days ago by
Fernando
• 0
0
votes
0
replies
92
views
Combining mRNA and total RNA studies
RNA-Seq
bulk
updated 6 days ago by
Ram
38k • written 6 days ago by
aksh
• 0
0
votes
0
replies
84
views
Twist Exome Sequencing Data: Palindromic Tandem Insertion-Deletion
NGS
Artefact
Twist
Sequencing
Exome
6 days ago by
TraPS-VarI
• 0
0
votes
0
replies
143
views
Bootstrap in PhyML
phyml
bootstrap
6 days ago by
Jimpix
▴ 10
233 results • Page
2 of 5
Recent Votes
Answer: installation of bioclite gives an error
Answer: installation of bioclite gives an error
A: FindConservedMarkers vs FindMarkers vs FindAllMarkers Seurat
Comment: difference between chip-seq and association study
C: Ballgown Error in file(file, "rt") : invalid 'description' argument
Subbmission Data
Finding Reference Sequences And Interpretation Of Data From Repeatmasker Ucsc Tables
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Recent Awards •
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Autobiographer
to
Genetics
▴ 20
Popular Question
to
paria.alipour
▴ 70
Popular Question
to
O.rka
▴ 650
Teacher
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GenoMax
125k
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epaminonda
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Elisabeth Gasteiger
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Recent Replies
Comment: installation of bioclite gives an error
by
rheab1230
▴ 120
Thank you so much. This works.
Comment: WGCNA TOM calculation time
by
tothepoint
▴ 720
I remeber I was working on highmem cluster and it took around a week to finish. Although, I consider Kevin suggestion and filtered the rea…
Answer: installation of bioclite gives an error
by
Kevin Blighe
84k
Hi, Installation via biocLite is no longer used. Please install packages via the *BiocManager* package, for example: BiocManager:…
Comment: difference between chip-seq and association study
by
rheab1230
▴ 120
okay, so in order to get a complete picture i can combine both of these methods?
Comment: Error with FindConservedMarkers()
by
Chris
▴ 60
Could other admins have a look?
Comment: What should I do if the gene IDs in my reference dataset and test dataset are di
by
paria.alipour
▴ 70
Here is the code that worked for me #read in the ref dataset reference <- readRDS("DR.rds") #convert ensemble id to gene symbol, I found …
Comment: WGCNA TOM calculation time
by
Michele
• 0
Hi tothepoint! I know it's been a long time, but I couldn't find an answer to this question and I'm now having the same question. So do you…
Answer: How to find the difference between old and current releases in UniprotKB
by
GenoMax
125k
> For specific entry id, what it has changed from previous releases to > current releases. If you are talking about a specific UniProt …
Answer: NCBI search with ENTREZ biopython last refseq version tag
by
vkkodali_ncbi
★ 3.4k
Try `latest_refseq` instead of `latest refseq`. Or, use quotes for it, like this: `'Microbacterium[Organism] AND "latest refseq"[Filter] NO…
Answer: PyMOL: Gaps in protein structure yet shown by the sequence
by
Mensur Dlakic
★ 22k
Dashing lines indicate that at least one residue is missing in the structure, possibly more. If you search for `REMARK 465` in the PDB f…
Answer: How to find the difference between old and current releases in UniprotKB
by
Mensur Dlakic
★ 22k
Not sure that you realize how many sequences are in UniProtKB. I don't think there is a way of doing this in a reasonable amount of time by…
Comment: How to determine the optimal number of clusters?
by
seidel
10k
Do you have a definition of optimal? Do you have a context in which something can be more optimal or less optimal? Can you provide any more…
Comment: Subbmission Data
by
seidel
10k
GEO allows you to keep your data private for up to three years, AND has a mechanism where you can share it with reviewers without it being …
Comment: PyMOL: Gaps in protein structure yet shown by the sequence
by
spence.lank
▴ 10
The PDB ID for this structure is 7DK3 and the literature is here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7775788/
Comment: Problem with tximport and plasmodium falciparum
by
ATpoint
69k
You do not do what I suggested above.
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