Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this year
all time
today
this week
this month
this year
1,000 results • Page
1 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
14
views
Plink merge errors.
merge
file
.bed
cygwin64
PLINK
1 hour ago by
Dinmukhamed
• 0
0
votes
1
reply
39
views
How do I get the gene annotations as a text file from a genebank file?
genebank
sequence-annotation
updated 3 hours ago by
BioinfGuru
★ 1.6k • written 4 hours ago by
eae6d2e7
• 0
0
votes
0
replies
30
views
Alignment with new reference
alignment
5 hours ago by
marco.barr
▴ 30
0
votes
0
replies
31
views
Bowtie2 alignment rate
galaxy
alignment
Bowtie
rate
8 hours ago by
pavithraashokkumar818
• 0
0
votes
0
replies
27
views
Variant calling of GBS data for polyploid plant
GBS
variants
polyploid
plant
8 hours ago by
analyst
▴ 10
0
votes
0
replies
36
views
Convert to ENTREZGENE
maize
ENTREZGENE
11 hours ago by
sansan_96
▴ 50
1
vote
0
replies
43
views
Synthetic lethality and cancer database
interaction
lethal
synthetic
12 hours ago by
Shicheng Guo
★ 9.4k
0
votes
1
reply
99
views
vcf file: number of samples does not match number of columns
vcf
bcftools
updated 16 hours ago by
Pierre Lindenbaum
160k • written 16 hours ago by
ekirsch
• 0
0
votes
4
replies
215
views
Is it reasonable to discard reads that show variation of quality across its length?
Trimming
14 hours ago by
BRENO
• 0
0
votes
2
replies
132
views
Error running local blastn in R using system2
blastn
NCBI
R
updated 15 hours ago by
Mensur Dlakic
★ 26k • written 18 hours ago by
Harrison
• 0
0
votes
1
reply
78
views
Looking for RPIP Illumina kit probe sequences
Sequences
Illumina
updated 20 hours ago by
GenoMax
140k • written 21 hours ago by
David Tachiquín
• 0
0
votes
9
replies
301
views
Low number of both surviving reads after trimming
trimmomatic
trimming
15 hours ago by
Jay
• 0
1
vote
2
replies
115
views
Number of CPUs to use by DRAP for transcriptomic assmbly
DRAP
CPU
transcriptomics
5 hours ago by
Mohamed Abderrahmane
▴ 10
3
votes
2
replies
119
views
Gene reads all zero for each sample
R
salmon
DE
DESeq2
22 hours ago by
DYLAN NICO
• 0
0
votes
0
replies
71
views
Contradictions in GSEA results
GSEA
Enrichment-analysis
PEA
updated 22 hours ago by
Ram
43k • written 23 hours ago by
Tolga
▴ 20
0
votes
0
replies
64
views
Illumina Dna Prep kit for sequencing phage linear genomes
tagmentation
transposons
phagetermini
sequencing
22 hours ago by
alenew.am
• 0
0
votes
3
replies
361
views
FindAllMarkers not working (Error (data layers are not joined. Please run JoinLayersWarning: When testing 1 versus all)
FindAllMarkers
seurat
re-clustering
22 hours ago by
Nitin
• 0
0
votes
1
reply
102
views
(sc)RNA-seq dataset for these cell lines: HEK293, HeLa, PC3 and U2OS
scRNA-seq
updated 23 hours ago by
Ram
43k • written 23 hours ago by
chiditatawmbi
• 0
0
votes
1
reply
125
views
Normalization strategies for comparing mapped reads across samples in RNA-seq
normalization
rnaseq
updated 22 hours ago by
Ram
43k • written 1 day ago by
Picasa
▴ 640
0
votes
0
replies
83
views
How to change alternate conformation occupancy ?
Bio.PDB.Atom
Bio.PDB
biopython
updated 22 hours ago by
Ram
43k • written 1 day ago by
udakshi
• 0
0
votes
0
replies
102
views
Training
chip-seq
ScATAC-seq
1 day ago by
Manhezz
• 0
1
vote
2
replies
133
views
Flow Cytometry Data Analysis by Seurat
Seurat
updated 21 hours ago by
Ram
43k • written 1 day ago by
gdfsnkfns
• 0
1
vote
11
replies
313
views
struggle to get fasta files from ucsc goldenPath
ucsc
getfasta
fasta
updated 20 hours ago by
GenoMax
140k • written 1 day ago by
Lila M
★ 1.2k
2
votes
2
replies
133
views
Volcano Plot Output Inquiry: Graphs Facing Down
rstudio
volcano-plot
updated 22 hours ago by
dariober
14k • written 1 day ago by
Pumla
• 0
0
votes
1
reply
100
views
Merging featureCounts output for different species
featureCounts
RNA-seq
updated 19 hours ago by
Ram
43k • written 1 day ago by
Christian
• 0
0
votes
0
replies
80
views
Combine rename and rmdup in SeqKit to remove duplicate sequences and append N in header? Sort by occurence?
seqkit
fasta
1 day ago by
Broccoli
• 0
0
votes
0
replies
76
views
Is there a good tool/reference for PBP and porin analysis
PBP
porin
1 day ago by
blur
▴ 280
0
votes
0
replies
91
views
meta-analysis on RNA seq AND microarray results
microarray
RNA
1 day ago by
liuyibin2005
• 0
0
votes
0
replies
75
views
SPOTlight deconvolution logFC, logFC cohen or mean.AUC
spatial-transcriptomics
SPOTlight
logFC
deconvolution
updated 23 hours ago by
Ram
43k • written 1 day ago by
M'zelle
• 0
0
votes
0
replies
97
views
In scRNA, How should I set QC standards?
scRNA
QC
1 day ago by
mnx0723
• 0
0
votes
0
replies
94
views
How to check if a few pathways have relationship?
MSigdb
REACTOME
KEGG
1 day ago by
Chris
▴ 260
2
votes
10
replies
730
views
Only one read per run - Trying to use CellRangerv7
Fastq
CellRanger
updated 23 hours ago by
Ram
43k • written 5 weeks ago by
Sky
▴ 10
0
votes
0
replies
100
views
doing some ontology enrichment analysis
GO
1 day ago by
aleksk779
• 0
0
votes
2
replies
164
views
novel and know mir156 and mir172
a
updated 1 day ago by
gayachit
▴ 200 • written 1 day ago by
Fadmo
• 0
2
votes
8
replies
266
views
Piping samtools to R
R
NGS
bash
samtools
1 day ago by
joe
▴ 470
0
votes
8
replies
420
views
STAR aligner options
STAR
1 day ago by
theophile
• 0
0
votes
2
replies
167
views
Why counting by diffbind and featurecounts differ?
featurecounts
diffbind
1 day ago by
Ankit
▴ 500
0
votes
1
reply
109
views
Wanting to make a Venn diagram of ATACseq peak files, unsure of where to start
ATAC-seq
updated 1 day ago by
Yogi
▴ 70 • written 1 day ago by
Ronin
• 0
0
votes
0
replies
81
views
Association Module to traits
module-trait-relationships
WGCNA
GENIE3
DOMINO
updated 1 day ago by
Ram
43k • written 1 day ago by
r.shiasi3897
▴ 10
0
votes
0
replies
85
views
Number of pathway result from GSVA
GSVA
1 day ago by
Chris
▴ 260
0
votes
1
reply
125
views
How can I remove duplicate SNP?
plink
updated 1 day ago by
iraun
6.2k • written 1 day ago by
Zhennan
• 0
0
votes
1
reply
133
views
SNP VCF files from hybrid populations and parental populations generated by GBS in public databases
contaminations
verification
parental
check
updated 1 day ago by
Ram
43k • written 1 day ago by
Hajar
• 0
0
votes
0
replies
79
views
Creating a custom ontology for peptides
ontology
peptide
1 day ago by
Mathew
• 0
0
votes
0
replies
79
views
GSEA number dimension of expression dataset
GSEA
2 days ago by
edoardofilippi1998
• 0
0
votes
0
replies
86
views
single cell data integration approach
comparison
integration
pairwise
singlecell
2 days ago by
Jay
• 0
0
votes
3
replies
219
views
High number of detected genes per cell after doublet removal - scRNAseq data
scRNAseq
duoblet
1 day ago by
sarahmanderni
▴ 100
0
votes
2
replies
156
views
Error with goodSamplesGenes()
R
WGCNA
1 day ago by
bioinfo_enthusiast
• 0
0
votes
0
replies
94
views
Variant Enrichment Analysis
Analysis
Enrichment
VEP
Variant
2 days ago by
Mojtaba
• 0
0
votes
7
replies
324
views
Salmon Quantification in Alignment based-mode
Salmon
RNA-seq
TPM
updated 1 day ago by
GenoMax
140k • written 2 days ago by
Patadu94
• 0
0
votes
1
reply
148
views
dbsnp flanks information
dbsnp
updated 2 days ago by
Pierre Lindenbaum
160k • written 2 days ago by
sskimvd
• 0
1,000 results • Page
1 of 20
Recent Votes
F*up Night style events for Bioinformatics ? Comment if you're interested!
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Volume II
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
Comment: Gene reads all zero for each sample
Synthetic lethality and cancer database
Answer: log2(TPM+1)
Comment: Error in openning FastQC
Recent Locations •
All
Belgium,
just now
Canada,
2 minutes ago
Canada,
4 minutes ago
Norway,
5 minutes ago
Belgium,
7 minutes ago
United States,
7 minutes ago
France,
9 minutes ago
Recent Awards •
All
Popular Question
to
svlachavas
▴ 780
Teacher
to
Pierre Lindenbaum
160k
Popular Question
to
brian.fristensky
▴ 460
Popular Question
to
Ann
★ 2.4k
Commentator
to
GenoMax
140k
Commentator
to
Devon Ryan
104k
Popular Question
to
amitpande74
▴ 20
Recent Replies
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Madelaine Gogol
5.3k
That sounds fun, and I've got some of these that I have told many people about (to keep them from making the same mistakes as me). I am pla…
Comment: Mapping ortholog human and mouse transcript
by
1769mkc
★ 1.2k
for hgnc and ensembl that can be done for transcript id for human to mouse ortholog its difficult to parse and map the exact version from g…
Comment: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of
by
Mensur Dlakic
★ 26k
Take it from someone who has hosted both a successful and a failed research topic: these deadlines are unrealistic. I am guessing you are p…
Answer: Tissue specific mRNA expression dataset in human and mouse
by
BioinfGuru
★ 1.6k
Awesome, years ago I wrote my thesis on the use of Tau to calculate tissue specificity, enjoy! The supplementary materials in the paper is…
Answer: Mapping ortholog human and mouse transcript
by
BioinfGuru
★ 1.6k
That error is on the server side, nothing to do with you, and is very common. Usually the fix is to try again in an hour, or to insert host…
Comment: Nanopore multisample variant calling
by
emilydolivo97
• 0
hello @colindaven , Did you find a suitable tool for this purpose please ? I'm dealing with fungal dataset
Comment: How do I get the gene annotations as a text file from a genebank file?
by
BioinfGuru
★ 1.6k
Can you upload or post a link to the genbank file please?
Comment: Mapping ortholog human and mouse transcript
by
manaswwm
▴ 490
I usually perform biomaRt queries with their `getBM()` function where I list the input using `filter` and `values` option and my request in…
Comment: DESeq2 and normalization
by
JH
• 0
Thank you for your response. I have often seen commands like dds <- estimateSizeFactors(dds) normalized_counts <- counts(dds, normalized=T…
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
by
Mohamed Abderrahmane
▴ 10
It's the case that there's no indication of multi-threading in the documentation. However, it made me wonder why the developers would restr…
Answer: Is RNAseq data from a monoclonal cell line technically considered scRNAseq?
by
Soheil
▴ 90
Bulk RNAseq from any sample is still considered a bulk sample. Running bulk RNA sequencing on a sample with any level of cell type/state c…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Yikes. Well, this is from an Illumina MiniSeq. Sure, I will use alignment, but only to remove host reads. Then the remaining reads will go …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
This is going to be tough to diagnose. Are you going to align to a reference? If so go ahead with the alignments to see if alignments turn …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Thank you for replying. I have separated the reads with at least one N on them and they account for 0.2% of the total reads in the file (8'…
Comment: Error running local blastn in R using system2
by
Mensur Dlakic
★ 26k
The `-db data/nt_euk` switch means that in your current directory you have a subdirectory called `data`, and all the `nt_euk` files are in …
Traffic: 2251 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6