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1,000 results • Page
3 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
2
replies
253
views
WGCNA
PCA
WGCNA
EIGENGENE
8 days ago by
rajasekargutha
▴ 60
0
votes
3
replies
249
views
BLASTP web- <20aa peptides- interpreting results/ minimum E value?
blast
peptide
blastp
alignment
updated 8 days ago by
GenoMax
141k • written 9 days ago by
neish
• 0
1
vote
0
replies
148
views
DESeq2 comparing timepoints within treatment and account for background control change
RNAseq
DEG
DESeq2
updated 9 days ago by
Ram
43k • written 9 days ago by
ian.will
▴ 30
0
votes
0
replies
101
views
Surrogate variable analysis for paired RNA seq experiment
sva
rnaseq
ruvseq
9 days ago by
nhaus
▴ 300
1
vote
3
replies
258
views
True variants selection
vcf
bcftools
updated 8 days ago by
dthorbur
★ 1.9k • written 9 days ago by
maevalefeuvre
• 0
0
votes
1
reply
151
views
How to reveal real AF of variant if duplicates can't be removed (such as in amplicon-seq)
allele-frequency
amplicon-seq
updated 9 days ago by
Ram
43k • written 9 days ago by
CY
▴ 750
0
votes
0
replies
100
views
Creating a BSgenome data package from a NCBI assembly - Virus
Virus
BSgenomeForge
BSgenome
R
9 days ago by
JirMan
▴ 20
1
vote
1
reply
165
views
Failed to download data from EBI with ascp
EBI
aspera
updated 9 days ago by
GenoMax
141k • written 9 days ago by
biock
▴ 60
0
votes
0
replies
391
views
BETA whether on the same scale when performing rank-based inverse normal transformation on the same type of phenotype data for two cohorts separately…
normal
inverse
transformation
9 days ago by
Isaac
• 0
0
votes
0
replies
101
views
Combining VG graphs
vg
graphs
combine
9 days ago by
AshleeThomson
▴ 70
0
votes
0
replies
105
views
Installing SALSA and HIRise scafolding software
scafolding
SALSA
genome-assembly
HIRise
updated 9 days ago by
Ram
43k • written 9 days ago by
Lissa Cruz Saavedra
• 0
0
votes
1
reply
176
views
Extract Di-nucleotide/Tri-Nucleotide substitution frequencies from MSA/VCF file
MSA
substitution
VCFstats
Evolution
VCF
updated 9 days ago by
Pierre Lindenbaum
161k • written 9 days ago by
Saran
▴ 50
0
votes
2
replies
261
views
Abundance Calculation in MetaPhlAn 3: Methodology, TPM or RPKM, and the Treatment of Unclassified Reads
MetaPhlAn
Normalization
RPKM
TPM
7 days ago by
ramin.k2013
• 0
0
votes
0
replies
154
views
Normalization in Metagenomics Sequencing By Total Number of Reads: Pre- or Post-Filtering and the Role of Unclassified Reads
Normalization
Metagenomics
updated 9 days ago by
Ram
43k • written 9 days ago by
ramin.k2013
• 0
0
votes
1
reply
158
views
Help with generating annotation database for dog genome to use in ANNOVAR for variant annotation of dog tumor sequences
ANNOVAR
updated 9 days ago by
Pierre Lindenbaum
161k • written 9 days ago by
sainavyav22
• 0
0
votes
9
replies
555
views
99.9999% of Q30 bases is normal?
RNA-seq
fastp
updated 8 days ago by
LauferVA
4.2k • written 10 days ago by
Aki
▴ 10
0
votes
0
replies
90
views
Issue while using circle_dat function from GOplot in R
GOplot
R
10 days ago by
ckelly96
• 0
0
votes
2
replies
180
views
Can't figure out plink --sample-diff
plink
10 days ago by
curious
▴ 750
0
votes
1
reply
136
views
Geneious Prime (Consense Sequence)
Consense
Sequence
updated 10 days ago by
GenoMax
141k • written 10 days ago by
Reno
• 0
1
vote
2
replies
205
views
convert a seurat object to expressionset
Seurat
9 days ago by
Bine
▴ 60
2
votes
4
replies
379
views
Per Base Sequence Content - continuous raise of G%
fastqc
updated 10 days ago by
GenoMax
141k • written 11 days ago by
pl.terzian
• 0
0
votes
0
replies
112
views
Inferring cell identity/genotype in single cells with missing information
cell
seurat
single
score
10 days ago by
txema.heredia
▴ 110
0
votes
0
replies
97
views
cibersortx colnames
gema122
10 days ago by
gem1
• 0
0
votes
2
replies
211
views
How to detect and visualize ORFs in bacterial genome?
statistics
visualization
ORFs
genome
8 days ago by
marongiu.luigi
▴ 710
0
votes
8
replies
5.3k
views
8 follow
cellranger mkref failed
next-gen-sequencing
software-error
RNA-seq
updated 10 days ago by
EricYang
• 0 • written 4.7 years ago by
Dan
▴ 180
0
votes
0
replies
97
views
Confused about the results of a function in dada2 pipeline sample inference step
Microbiome
R
dada2
10 days ago by
Mohamed Samir
▴ 20
1
vote
4
replies
788
views
I want to calculate if the sample has whole genome duplication event or not?
sequencing
wgs
10 days ago by
Hyper_Odin
▴ 310
2
votes
4
replies
274
views
Addmetadata to seurat obj
seurat
9 days ago by
synat.keam
▴ 100
0
votes
0
replies
96
views
Methylation array analysis using dmpFinder
epic
methylation
normalization
dmp
mset
10 days ago by
Roy
▴ 10
0
votes
0
replies
183
views
Confused by the `--ld-window` flag in Vcftools. What does the number of SNPs between SNPs mean?
tabix
vcftools
10 days ago by
rijan_dhakal2055
• 0
0
votes
5
replies
380
views
Used featureCounts to generate a count matrix for sc RNA-seq and it has all 0s.
scRNA-seq
updated 10 days ago by
GenoMax
141k • written 10 days ago by
Shay
• 0
2
votes
2
replies
222
views
How to establish haplotype-specific gene expression levels
RNA-seq
Haplotype
10 days ago by
javanokendo
▴ 60
0
votes
0
replies
100
views
Databases with GoF (Gain of Function) annotations.
gof
lof
gain-of-function
11 days ago by
_quantum_girl_
▴ 10
0
votes
2
replies
228
views
Problem with downloading genome in SnpEff
SnpEff
10 days ago by
Javier
• 0
0
votes
0
replies
101
views
Comparison between Bracken outputs
Bracken
Kraken
Taxonomy
11 days ago by
SushiRoll
▴ 120
0
votes
4
replies
257
views
Adaptive sampling for whole chromosomes
T2T
Nanopore
AdaptiveSampling
aneuploidy
centromeres
10 days ago by
njornet
▴ 20
0
votes
0
replies
115
views
DESeq2 LRT divergent DEGs ?
interaction
LRT
deseq2
11 days ago by
klervi-lugue
• 0
0
votes
2
replies
210
views
BLASTP short sequences (<20aa) - interpreting results
blast
sequence
blastp
alignment
10 days ago by
neish
• 0
0
votes
3
replies
258
views
rRNA depletion of RIP-seq samples
rRNA
RIP-seq
updated 10 days ago by
joe
▴ 510 • written 11 days ago by
CrisRisu
• 0
0
votes
1
reply
152
views
P-values for pairwise FST
FST
P-value
pairwise
updated 11 days ago by
dthorbur
★ 1.9k • written 11 days ago by
Emy
▴ 50
0
votes
4
replies
320
views
What is the samtools flag used in bamPEFragment?
deeptools
updated 9 days ago by
GenoMax
141k • written 11 days ago by
Soohyun
• 0
0
votes
0
replies
233
views
batch correction: cds from seurat
batch-correction
R
seurat
monocle3
cds
updated 11 days ago by
Ram
43k • written 11 days ago by
sooni
▴ 20
0
votes
0
replies
136
views
Seurat Package
seurat
11 days ago by
odi
▴ 10
0
votes
0
replies
114
views
RUVg correction
differential-expression
ruvseq
updated 11 days ago by
Ram
43k • written 11 days ago by
Shaimaa Gamal
▴ 10
0
votes
0
replies
117
views
How to annotate pairwise p value from limma (3 groups) in a combine multiple boxplot?
limma
boxplot
10 days ago by
Chris
▴ 260
0
votes
0
replies
129
views
Methylation workflow problem
rstudio
methylation
updated 11 days ago by
Ram
43k • written 11 days ago by
Roy
▴ 10
0
votes
0
replies
127
views
ChIP-seq gene blacklist for Rattus norvegicus
rat
blacklist
ChIP-seq
11 days ago by
Thomas
• 0
2
votes
2
replies
249
views
How to row normalize a matrixplot?
scRNA-seq
RNA-seq
single-cell
scanpy
4 days ago by
bioinfo
▴ 150
0
votes
5
replies
495
views
seg fault, core dumped with manta 1.6.0
manta
gdb
updated 11 days ago by
Ram
43k • written 15 days ago by
Greg
• 0
0
votes
1
reply
196
views
Pattern of GC content across reads from fastp
multiqc
ddRAD
updated 11 days ago by
GenoMax
141k • written 11 days ago by
jberg
• 0
1,000 results • Page
3 of 20
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Answer: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
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Type ``` help("read.idat") ``` and read the example at the bottom of the page, which shows you how to set the `other$Detection` component o…
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