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1,000 results • Page
3 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
168
views
How to perform analysis with given copy number variation datasets between disease and control cohorts
CNV
analysis
10 days ago by
Tsin-Lau
• 0
0
votes
0
replies
114
views
Pathview Enzyme Code to Gene Symbol Conversion
Pathview
KEGG
10 days ago by
B.N.
• 0
0
votes
3
replies
278
views
Jellyfish problem with Failed to open input file 'reads.jf'
jellyfish
kmer
fastq
9 days ago by
m.t.lorenc
• 0
0
votes
6
replies
503
views
Problem aligning target capture sequencing of a few hundred regions to the human reference genome
GATK4
bwa-mem
target-capture-sequencing
alignment
8 days ago by
Miguel
• 0
0
votes
0
replies
107
views
Ancestral Allele FASTA sequence aligned with Candidate Gene Region
Allele
GRSch38
Ancestral
FASTA
GRSch37
10 days ago by
Warrenkb
• 0
0
votes
3
replies
332
views
ANNOVAR Error: All variants in a VCF register as "invalid genotype records in input file"
genomics
wgs
vcf
annovar
updated 9 days ago by
MatthewP
★ 1.3k • written 10 days ago by
skinny_genes
• 0
0
votes
0
replies
143
views
Getting all the X associated genes of an organism
Rattus-norvegicus
neurobiology
updated 10 days ago by
Ram
41k • written 10 days ago by
Uri
• 0
0
votes
0
replies
122
views
coupling Cufflinks results with RSEM
transcript-level-quantification
RSEM
transcriptome-assembly
Cufflinks
10 days ago by
sofiablancoglez
• 0
4
votes
6
replies
380
views
Unexpected separation of RNA-seq samples on PCA plot
depletion
PCA
rRNA
plot
RNA-seq
10 days ago by
Tihana
▴ 10
2
votes
1
reply
155
views
Extract variants from 100 000 genomes project
variants
100000-genomes-project
updated 10 days ago by
Ram
41k • written 11 days ago by
Mairena
• 0
0
votes
0
replies
111
views
NA values in conumee detail
cnv
copy-number
conumee
updated 10 days ago by
Ram
41k • written 11 days ago by
sativus
▴ 10
1
vote
2
replies
260
views
How to remove batch effect in RNA-seq using control samples?
Batch-effect
RNA-seq
10 days ago by
AS20
▴ 10
0
votes
0
replies
109
views
Which of the following relationships is correct for making a hypothetical ceRNA?
cancer
lncRNA
ceRNA
RNA
miRNA
11 days ago by
mohammadhassanj
▴ 260
0
votes
0
replies
141
views
How to obtain full alignment results?
giraffe
vg
11 days ago by
nrqstudent
• 0
0
votes
1
reply
213
views
Seeking Advice on Validating RNA-Seq Data Before Differential Analysis
RNA-Seq
updated 11 days ago by
ATpoint
78k • written 11 days ago by
Tully
• 0
1
vote
1
reply
197
views
Model matrix confront 2 groups out of 3
modelmatrix
r
designformula
deseq2
drimseq
updated 12 days ago by
ATpoint
78k • written 12 days ago by
dylannicoembros
• 0
0
votes
0
replies
161
views
Extracting conserved sequences with clustralw
conservation
clustalw
updated 12 days ago by
Pierre Lindenbaum
158k • written 12 days ago by
iftikharmaryam123
• 0
0
votes
0
replies
168
views
TSSAR and TSSpredator
sRNA
TSS
12 days ago by
Sado
• 0
0
votes
7
replies
525
views
Issue with Merging BCF Files: Invalid INFO id Error
bcftools
updated 10 days ago by
Ram
41k • written 13 days ago by
George
• 0
0
votes
3
replies
391
views
percentage of cells in each cluster- Seurat
seurat
updated 10 days ago by
seidel
11k • written 13 days ago by
odi
▴ 10
0
votes
0
replies
197
views
PANTHER functional classification
PANTHER
Gene-Ontology
updated 13 days ago by
Ram
41k • written 13 days ago by
rls_08
▴ 40
0
votes
2
replies
316
views
How to perform liftover from 38 to 37 in R?
R
genomics
hail
liftover
gwas
12 days ago by
DN99
▴ 20
0
votes
0
replies
176
views
Circos error value
circos
13 days ago by
KiInga
• 0
0
votes
0
replies
176
views
beagle to gds for admixture mapping
admixture
genesis
gwastools
gds
beagle
13 days ago by
nanodano
▴ 30
0
votes
2
replies
256
views
error in determining minimum contigs in Velvet
contigs
terminal
velvet
13 days ago by
Kárita
• 0
2
votes
2
replies
296
views
DESeq2 installation failures
DEseq2
updated 11 days ago by
Michael
53k • written 13 days ago by
dantuluri
• 0
0
votes
0
replies
189
views
Seurat clustering results
seurat
UMAP
clustering
single-cell
13 days ago by
Kaia
• 0
0
votes
4
replies
572
views
WGCNA Analysis - blockwiseModules data processing
WGCNA
blockwiseModules
updated 13 days ago by
GenoMax
136k • written 3 months ago by
Raito92
▴ 90
1
vote
4
replies
372
views
Efficient Bulk Data Retrieval from NCBI BioProject
ncbi
SRAtoolkit
prefetch
13 days ago by
George
• 0
3
votes
4
replies
418
views
Downstream analysis with DEseq2 normalization
DEseq2
integration
11 days ago by
QX
• 0
0
votes
0
replies
168
views
ripSeek error : no method or default for coercing “NULL” to “GRanges”
R
ripSeek
ripSeeker
RIP
14 days ago by
maria
• 0
1
vote
3
replies
306
views
gnomAD4.0 Hail Table Downloading
NGS
gnomAD
updated 13 days ago by
Ram
41k • written 14 days ago by
adarsh_pp
▴ 30
0
votes
0
replies
167
views
Help with coshing mutations for oncoplot
oncoplot
maftools
14 days ago by
Toni
• 0
0
votes
0
replies
169
views
Handling male samples chrX vcf genotype from 1000G high-coverage 30x
chrX
1000G
vcf
male
genotype
14 days ago by
Pau
• 0
0
votes
0
replies
165
views
Bedtools coverage -hist "all" in chr column
-hist
Coverage
option
breadth
Bedtools
14 days ago by
Smriti
▴ 10
0
votes
2
replies
261
views
UCSC Genome Browser Custom Track Blank
customtrack
UCSC
chipseq
13 days ago by
Daniel
▴ 30
0
votes
1
reply
216
views
Error with HTseq RNAseq read count
RNAseq
HTseq
updated 14 days ago by
GenoMax
136k • written 14 days ago by
Catalina
• 0
0
votes
4
replies
393
views
Calculation of ChIP-seq normalization factors with non-conventional spike-in assumptions
DiffBind
csaw
normalization
spikein
ChIPseq
13 days ago by
jared.andrews07
★ 16k
0
votes
2
replies
256
views
How to change "CompressedGRangesList" to "GRangesList"
liftOver
minfi
13 days ago by
Aki
▴ 10
0
votes
2
replies
250
views
Can FPKM be used to create bar graphs for DEGs?
RNA-seq
19 hours ago by
junli1988
• 0
0
votes
3
replies
322
views
RNA star taking more than 24h to complete 2nd pass
rna-seq
star
updated 14 days ago by
Ram
41k • written 14 days ago by
manuelmourato25
• 0
1
vote
1
reply
231
views
Eigen_phred_coding values interpretation
variation
SNP
annotation
9 days ago by
Lukas
▴ 40
0
votes
1
reply
623
views
Trouble with Ligand-Protein Docking in AutoDock Vina: Shows an error when docked against a new set of ligands
Docking
Protein-receptor
Ligand-Protein-Docking
AutoDock-Vina
updated 14 days ago by
Ram
41k • written 14 days ago by
bandaru
• 0
0
votes
0
replies
137
views
Deconvolution using cibersortx, help with real example
deconvolution
cibersortx
14 days ago by
Dyno
• 0
0
votes
0
replies
134
views
How to correct the position of my primers
Python
primer3
updated 15 days ago by
Pierre Lindenbaum
158k • written 15 days ago by
Keith
• 0
0
votes
7
replies
423
views
Using Primer3 with python to genotype a SNP at a particular position
primer3
python
position
primer
updated 14 days ago by
Pierre Lindenbaum
158k • written 15 days ago by
Keith
• 0
0
votes
7
replies
330
views
SNP calling with many samples using bcftools
bcftools
SNP
multithreading
15 days ago by
George
• 0
0
votes
0
replies
113
views
Combining SNP array data from different chip versions
Array
Illumina
SNP
GWAS
15 days ago by
Marlene
• 0
0
votes
0
replies
112
views
Getting message while running generateMap.pl from hmmcopy_utils
cnv
linux
mappability
hmmcopy_utils
14 days ago by
kabir.deb
▴ 80
0
votes
1
reply
450
views
Error in H5Fopen
atac-seq
scatac-seq
updated 15 days ago by
caiden.golder
• 0 • written 17 months ago by
bioinformatics.girl
▴ 20
1,000 results • Page
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Answer: 1000 genomes project reference panel - GRCh38
Answer: 1000 genomes project reference panel - GRCh38
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IMPUTE2- Map file for custom reference panel
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Comment: Wrong in Deeptools : the enrichment of TSS and TES region are similar when using
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you have not mentioned what kind of resources you have, how much data you have to process and what the expected genome/transcriptome sizes …
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Its not my data. An external researcher is visiting and she wanted from us to do some bioinformatics... The samples were not sequenced by u…
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They could have saved themselves a ton of money by sequencing this on a miseq.
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I think there are tools like ragtag https://github.com/malonge/RagTag that could help. you can also align your reads back to your new assem…
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