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137 results • Page
2 of 3
Sort: replies
Rank
Views
Votes
Replies
1
vote
2
replies
175
views
Converting RefSeq protein accession IDs into entreZ IDs
RNA-SEQ
5 hours ago by
Pegasus
▴ 90
1
vote
2
replies
250
views
DEgs RNAseq
RNAseq
3 days ago by
Juan
• 0
0
votes
2
replies
271
views
Import or read Snapgene .dna files into R
R
.dna
snapgene
5 days ago by
eggrandio
▴ 40
0
votes
2
replies
268
views
About inconsistent cell counts per samples obtained in small nuclear RNAseq data.
Seurat
QC
Single-Cell
5 days ago by
bk11
▴ 60
0
votes
2
replies
202
views
BCR/TCR analysis using target capture sequencing data
capture
ngs
TCR
BCR
13 hours ago by
J.F.Jiang
▴ 900
0
votes
1
reply
28
views
mitochondrial genome, SRA PacBio sequencing.
Mitochondrial
PacBio
SRA
Mitogenome
updated 1 hour ago by
GenoMax
129k • written 2 hours ago by
hashim.rana11
• 0
0
votes
1
reply
740
views
Can I send my PyMol results to a web-page as a result for a submitted query? If not, how can I get a 3d render of a protein as a result for a user su…
protein-structure
pymol
protein
pdb
python
updated 1 day ago by
Joe
21k • written 5 days ago by
Aatif Hashmi
• 0
0
votes
1
reply
12
views
readGenericHeader() error message Limma
rna
limma
microarray
genomics
normalization
updated 42 minutes ago by
Raony Guimarães
★ 1.2k • written 1 hour ago by
survive
• 0
0
votes
1
reply
222
views
Variant Annotation
Variant-Annotation
VCF
R
updated 5 days ago by
Ram
39k • written 5 days ago by
Chethana
• 0
0
votes
1
reply
60
views
Create customized gene annotation file
reference-genome
cellranger
updated 42 minutes ago by
Ram
39k • written 7 hours ago by
rhonddaskl
• 0
0
votes
1
reply
9
views
Ambient RNA expression correction
scRNAseq
SoupX
Seurat
updated just now by
swbarnes2
13k • written 41 minutes ago by
Pac314
▴ 10
0
votes
1
reply
153
views
Samtools index and sambamba-depth error?
linux
samtools
indexing
sambamba
updated 6 days ago by
Pierre Lindenbaum
154k • written 6 days ago by
MobiusT
▴ 10
0
votes
1
reply
932
views
Questions about assembly of large metagenomics dataset
assembly
metagenomics
megahit
updated 5 days ago by
Ram
39k • written 4.5 years ago by
zorrilla
• 0
0
votes
1
reply
752
views
Where can I find Time Series Multi-Omics human cancer datasets
multi-omics
cancer
time-series
updated 1 day ago by
Ram
39k • written 3.2 years ago by
donnieDarko
• 0
0
votes
1
reply
131
views
How to calculate SARS-2'S evolutionary rate
evolutionary-rate
updated 1 day ago by
Ram
39k • written 1 day ago by
chengc2016zzu
• 0
0
votes
1
reply
131
views
ABySS Process Killed
ABySS
genome
assembly
updated 2 days ago by
GenoMax
129k • written 2 days ago by
asarcillo
• 0
0
votes
1
reply
66
views
How to get a comperative result of 2 bed files?
bam
cnv
bed
updated 6 hours ago by
Pierre Lindenbaum
154k • written 7 hours ago by
herh
• 0
0
votes
1
reply
802
views
Segmentation method in CNV
CNV
sequencing
updated 20 hours ago by
Ram
39k • written 4.1 years ago by
nesma.abdelaziz
• 0
0
votes
1
reply
246
views
too many zeros in 16S rRNA amplicon sequencing data
16S
rRNA
updated 3 days ago by
andres.firrincieli
3.3k • written 5 days ago by
zhangdengwei
▴ 180
0
votes
1
reply
196
views
Identifying Mutation Frequency Changes in MSAs over time?
Mutation
Fasta
MSA
MutationRate
RNA-Seq
updated 5 days ago by
Vincent Laufer
★ 2.8k • written 5 days ago by
Saran
▴ 20
0
votes
1
reply
233
views
problem of Global Biobank Meta-analysis Initiative
GWAS
updated 2 days ago by
Fabio Marroni
★ 3.0k • written 3 days ago by
1362321710
• 0
0
votes
1
reply
151
views
weird behaviour on bedtools
bedtools
RNA-Seq
updated 19 hours ago by
Ram
39k • written 2 days ago by
barrypraveen
▴ 110
0
votes
1
reply
200
views
Finding Kinetic Parameters from Western Blot images
image-processing
western-blot
updated 5 days ago by
Ram
39k • written 5 days ago by
Vijeth
• 0
0
votes
1
reply
165
views
Why coordinate sort is required in sambamba depths?
sorting
coordinate
sambamba
linux
samtools
updated 2 days ago by
Pierre Lindenbaum
154k • written 2 days ago by
MobiusT
▴ 10
0
votes
1
reply
132
views
Seurat: How to get all genes name of a cell ?
seurat
updated 17 hours ago by
jv
★ 1.2k • written 1 day ago by
Picasa
▴ 640
0
votes
1
reply
128
views
NCBI Common Taxonomy Tree
phylogenetic-tree
comparative-taxonomy
ncbi
updated 21 hours ago by
GenoMax
129k • written 1 day ago by
fafad046
• 0
1
vote
1
reply
219
views
DownsampleSam
picard
DownsampleSam
updated 3 days ago by
Pierre Lindenbaum
154k • written 3 days ago by
mathalfilip
• 0
0
votes
1
reply
166
views
How to introduce normalized and scaled seurat data into monocle 3?
Monocle
scRNA-seq
Seurat
updated 1 day ago by
fracarb8
▴ 950 • written 2 days ago by
Sun
• 0
1
vote
1
reply
2.6k
views
Comparing time series expression data
time-series
gene-expression
updated 1 day ago by
Ram
39k • written 5.8 years ago by
The
▴ 180
0
votes
1
reply
848
views
Get publication counts per gene per year
eutilities
updated 1 day ago by
Ram
39k • written 4.2 years ago by
abhijit.synl
▴ 60
1
vote
1
reply
987
views
cfDNA target seq vs. cfDNA WES
cfDNA
updated 6 days ago by
Ram
39k • written 4.9 years ago by
genetic
▴ 40
1
vote
1
reply
1.3k
views
Can HISAT2 be invoked in bash shell, and can it be fed variables or names with wildcards as inputs?
Bash
Shell
HISAT2
updated 4 days ago by
Ram
39k • written 4.3 years ago by
RNAseqer
▴ 240
1
vote
1
reply
163
views
Import Pymol into Python Script
Pymol
python
updated 5 days ago by
Wayne
★ 1.8k • written 6 days ago by
jdrohan
• 0
0
votes
1
reply
140
views
making metadata file for differential gene expression analysis
RNAseq
updated 6 days ago by
Basti
★ 1.5k • written 6 days ago by
Sara
▴ 220
0
votes
1
reply
220
views
Error while running Megahit
Megahit
updated 3 days ago by
Mensur Dlakic
★ 23k • written 4 days ago by
abhiramiabhirami9072
• 0
0
votes
1
reply
297
views
Deferentially expressed gene with high log2foldchange by DESeq2; but not meaningful at the individual level
DESeq2
RNA-seq
DGEA
updated 4 days ago by
Vincent Laufer
★ 2.8k • written 5 days ago by
Sara
▴ 10
0
votes
0
replies
677
views
Brownian motion : Understanding the output of mvBM function.?
Phylogeny
Brownian
updated 5 days ago by
Ram
39k • written 4.5 years ago by
naveen_gabriel
• 0
0
votes
0
replies
192
views
Error in running Abyss assembler for chicken genome assembly
abyss
assembly
genome
fasta
5 days ago by
Maliha
▴ 20
0
votes
0
replies
931
views
Where can I find, which yeast genes definitely have similar functions?
gene
functional-genomics
RNA-Seq
time-series
updated 1 day ago by
Ram
39k • written 6.2 years ago by
Thomas.F.Hahn3
▴ 30
0
votes
0
replies
666
views
How to calculate the input-subtract signal for a specific enhancer region
next-gen-sequencing
ChIP-Seq
updated 4 days ago by
Ram
39k • written 4.3 years ago by
biofandd
• 0
0
votes
0
replies
157
views
BEAST Divergence time Analysis
time
BEAST
BEAUti
divergence
5 days ago by
ahmadjoyyia
▴ 10
0
votes
0
replies
32
views
including samples for which group is unknown to help adjust for another variable
TCGA
design
RNA-Seq
deseq2
3 hours ago by
pilargmarch
▴ 80
0
votes
0
replies
98
views
pseudo-bulk
scRNAseq
DE
updated 21 hours ago by
Ram
39k • written 22 days ago by
safeassli
• 0
0
votes
0
replies
192
views
corresponding clinical data from TCGA database of PSI values for CCA AS events in spliceseq database
TCGA
4 days ago by
dima
• 0
0
votes
0
replies
862
views
Error processing Hi-data using HiCUP
NGS
HiCUP
Hi-C
updated 16 minutes ago by
Ram
39k • written 4.0 years ago by
srhic
▴ 40
1
vote
0
replies
1.2k
views
Align two single cell experiments
R
single-cell
updated 5 days ago by
Ram
39k • written 4.5 years ago by
elb
▴ 230
0
votes
0
replies
38
views
metagenomics data - AMR genes
amr
resistome
resistance
ARG
metagenomics
7 hours ago by
aziznasr1920
• 0
0
votes
0
replies
11
views
Manhattan Plot with independent significant hits
plot
Manhattan
39 minutes ago by
en_keser
• 0
0
votes
0
replies
631
views
Need open dataset of hydrocarbons in SMILE/ Chemfig/ Tex
latex
chemfig
smile
dataset
updated 5 days ago by
Ram
39k • written 4.4 years ago by
pgp14.aseem
• 0
0
votes
0
replies
107
views
Picard's CollectGcBiasMetrics gc-bias plot- help with interpretation
picard
gc-bias
wes
6 days ago by
bompipi95
▴ 120
137 results • Page
2 of 3
Recent Votes
Answer: Panther db Reference List
Answer: Panther db Reference List
Answer: Panther db Reference List
A: topGO which statistical test (fisher or KS) to use ?
Answer: I don't want to believe the Interproscan DB estimated download time.
Answer: I don't want to believe the Interproscan DB estimated download time.
Answer: I don't want to believe the Interproscan DB estimated download time.
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Recent Replies
Comment: Panther db Reference List
by
e.r.zakiev
▴ 50
Amazing, thank you very much! How did you know where to look??
Comment: Concatenating text files based on common indices
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39k
I've removed tags such as `genetics`, `genes` and `bioinformatics`. The last tag makes no sense - ***EVERY QUESTION*** here is related to b…
Comment: Docker Error while running nf-core/rnaseq pipeline
by
ATpoint
72k
No it doesn't. If you setup Docker correctly it works fine on WSL just as on native Linux, I use Docker on WSL2 all the time without proble…
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What @atpoint said. But given that, getting the distance between features depends on the tool you're using and how you ask questions. The "…
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Answer: Panther db Reference List
by
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129k
Looks like the file for Mouse is available: http://data.pantherdb.org/ftp/sequence_classifications/current_release/PANTHER_Sequence_Classif…
Comment: readGenericHeader() error message Limma
by
Raony Guimarães
★ 1.2k
Can you post the error you are getting after renaming the colnames?
Answer: ABO alleles
by
Raony Guimarães
★ 1.2k
You could use a tool such as BOOGIE to infer the ABO alleles using VCF files: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4404330/
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You could use blastn to align your fasta reference against the other common fasta references and find out which one you have: blast …
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andres.firrincieli
3.3k
Honestly, I would proceed only with the R1 reads however, you should probably post this question in the qiime2 forum. You can probably find…
Comment: I don't want to believe the Interproscan DB estimated download time.
by
gh
• 0
Thank you!
Comment: What Are The Most Common Stupid Mistakes In Bioinformatics?
by
Raony Guimarães
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You should also have told the correct command: grep '>' some.fasta And yes, of course, I did this before as well :D
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3.3k
> Ah, I just realized that I set the TOMType to signed. Is that > something different than the network type? It is a setting used for the …
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by
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Okay, will do this! Using a Ubuntu subsystem on Windows so maybe it had something to do with that :(
Answer: Can any one suggest tools that generate "mind-maps" on concepts in biology/biote
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I don't know one specifically for biology but I would suggest [Miro][1] as a general-purpose mind mapping tool. [1]: https://miro.co…
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