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updated 8 weeks ago by
Ram
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written 6.7 years ago by
Shaurya Jauhari
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8 months ago by
shivangi.agarwal800
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90
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updated 6 months ago by
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0
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written 20 months ago by
merfer0206
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10 months ago by
blackadder
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updated 9 months ago by
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written 4.0 years ago by
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written 7.4 years ago by
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550
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775
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130
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466
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100
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50
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20
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70
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50
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220
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970
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30
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10
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13
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Recent Replies
Comment: Extracting only soft/hard clipped reads from a bam file
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d-cameron
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If you want multithreaded I/O the command-line is a pretty annoying (since you're running a tool within gridss, not the whole pipeline): yo…
Answer: Extracting only soft/hard clipped reads from a bam file
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Have you considered using a SV breakpoint calling tool (using a reference that includes both host and viral sequence), or a viral integrati…
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There isn't anything in your post to suggest that subread is missing FTH1 or it's exons. If these reads match the pseudogene region even sl…
Comment: Asking for introduction of a database
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Thank you for your suggestion;
I used the STRING database and LEM (eukaryotic linear motifs).
My protein has different Motifs and Domains …
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Pandas is notoriously slow at reading in large datasets
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Thank you so much! Will try to run the analysis with the file and check it! Thanks again!!
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As long as the file is not empty it should be good.
Comment: Error in converting vcf file to plink format
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____________________________________________
I just tried with plink 1.9 and it worked pretty well!!!! Thank you once again!
Comment: Error in converting vcf file to plink format
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Thank you so much for your reply with clarification. I will try with plink 1.9!
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This error is a consequence of using plink 1.07, which has to load the entire dataset into memory, instead of plink 1.9, which is capable o…
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Thank you so much! I just check my workinf directory with "ls" and I was able to find the file name "20100804.All.panel". Does this means i…
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While you wait on other answers start here: https://string-db.org/
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Correct. This looks like a problem with your local network. I was able to access the link without problems.
Comment: Error in converting vcf file to plink format
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Madhawa
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Thank you for your information. I just tried with your command and got the error as Temporary failure in name resolution. Did you mean like…
Comment: Error in converting vcf file to plink format
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Try
wget -O 20100804/20100804.ALL.panel http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20100804/20100804.ALL.panel
If you continue…
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