updated 17 hours ago by
Ram
37k
•
written 7.1 years ago by
james.blackshaw
▴
10
1
vote
1
reply
5.6k
views
0
votes
2
replies
3.9k
views
0
votes
1
reply
3.5k
views
5
votes
1
reply
3.3k
views
updated 13 hours ago by
Ram
37k
•
written 7.1 years ago by
noushin.farnoud
▴
120
1
vote
0
replies
3.2k
views
updated 9 hours ago by
Ram
37k
•
written 7.1 years ago by
tiago211287
★
1.4k
0
votes
0
replies
3.1k
views
5
votes
20
replies
2.9k
views
1
vote
2
replies
2.5k
views
updated 17 hours ago by
Ram
37k
•
written 7.1 years ago by
kevin.wyatt.mcmahon
•
0
0
votes
2
replies
2.4k
views
updated 9 hours ago by
Ram
37k
•
written 7.1 years ago by
Varun Gupta
★
1.2k
0
votes
1
reply
2.4k
views
2
votes
2
replies
2.4k
views
1
vote
13
replies
2.4k
views
7
votes
8
replies
2.3k
views
0
votes
2
replies
2.2k
views
0
votes
0
replies
1.8k
views
updated 14 hours ago by
Ram
37k
•
written 7.1 years ago by
guisa.santos
•
0
0
votes
0
replies
1.7k
views
0
votes
1
reply
1.6k
views
2
votes
5
replies
1.6k
views
0
votes
3
replies
1.6k
views
updated 9 hours ago by
Ram
37k
•
written 7.1 years ago by
murphy.charlesj
▴
90
0
votes
0
replies
1.4k
views
updated 13 hours ago by
Ram
37k
•
written 7.1 years ago by
james.blackshaw
▴
10
0
votes
1
reply
1.3k
views
0
votes
0
replies
943
views
updated 13 hours ago by
Ram
37k
•
written 7.1 years ago by
vidyasaral
•
0
2
votes
16
replies
467
views
6 follow
updated 20 hours ago by
benformatics
3.1k
•
written 14 days ago by
Joel Wallenius
▴
100
0
votes
6
replies
243
views
13 minutes ago by
Gerard
•
0
2
votes
4
replies
199
views
0
votes
1
reply
153
views
0
votes
5
replies
147
views
1
vote
4
replies
134
views
updated 16 hours ago by
GenoMax
120k
•
written 19 hours ago by
lluc.cabus
▴
20
0
votes
1
reply
133
views
0
votes
1
reply
126
views
0
votes
1
reply
94
views
updated 21 hours ago by
andres.firrincieli
2.8k
•
written 1 day ago by
das2000sidd
▴
30
0
votes
1
reply
77
views
0
votes
1
reply
65
views
updated 19 hours ago by
Pierre Lindenbaum
149k
•
written 20 hours ago by
Neel
▴
20
0
votes
2
replies
60
views
4 hours ago by
mohamadzare6022
•
0
0
votes
1
reply
60
views
updated 16 hours ago by
andres.firrincieli
2.8k
•
written 17 hours ago by
yuhangzhu199512
•
0
0
votes
0
replies
50
views
0
votes
0
replies
49
views
0
votes
0
replies
47
views
0
votes
0
replies
46
views
0
votes
0
replies
42
views
5 hours ago by
Camilo Andres
•
0
0
votes
0
replies
34
views
0
votes
0
replies
31
views
0
votes
0
replies
24
views
30 minutes ago by
Scabbards
•
0
0
votes
1
reply
6
views
updated just now by
Devon Ryan
102k
•
written 11 minutes ago by
Amr
▴
70
Recent Votes
Recent Locations •
All
Singapore, just now
Australia, just now
United Kingdom, just now
Swizerland, 3 minutes ago
Freiburg, Germany, 4 minutes ago
San Francisco, 4 minutes ago
Spain, 5 minutes ago
Recent Awards •
All
Centurion to
Devon Ryan
102k
Scholar to
Istvan Albert
94k
Popular Question to
Bogdan
★
1.3k
Popular Question to
Rafael Soler
★
1.1k
Scholar to
rpolicastro
9.8k
Recent Replies
Comment: Why the number of genes decreased after dds (DESeqDataSetFromMatrix)?
by
Devon Ryan
102k
Just a guess, but count how many have 0 counts in all samples before and after running that function.
Comment: Supergnova stuck in tutorial
by
Gerard
•
0
Thanks for all the suggestions. I created an issue but, unfortunately, was not answered.
I managed to solve the issues I was having changi…
Answer: Microarray DEG analysis visualisation
by
antmantras
▴
30
You could make a volcano plot of all the genes in your DEG and highlight the one that you are interested in. Although you will be only usin…
Comment: Fasta headers column spilt or selection
by
antmantras
▴
30
Yeah, I know it can be written with:
grep ">" myfile.fasta | awk '{print $3}' > output.txt
if one is only looking for the names of th…
Comment: Extracting only soft/hard clipped reads from a bam file
by
d-cameron
★
2.7k
If you want multithreaded I/O the command-line is a pretty annoying (since you're running a tool within gridss, not the whole pipeline): yo…
Answer: Extracting only soft/hard clipped reads from a bam file
by
d-cameron
★
2.7k
Have you considered using a SV breakpoint calling tool (using a reference that includes both host and viral sequence), or a viral integrati…
Answer: Reads mapping to pseudogenes using RSubread
by
Gordon Smyth
★
5.0k
There isn't anything in your post to suggest that subread is missing FTH1 or it's exons. If these reads match the pseudogene region even sl…
Comment: Asking for introduction of a database
by
mohamadzare6022
•
0
Thank you for your suggestion;
I used the STRING database and LEM (eukaryotic linear motifs).
My protein has different Motifs and Domains …
Answer: Converting PLINK binary files into python dataframe
by
Istvan Albert
94k
Pandas is notoriously slow at reading in large datasets
I would recommend an alternative like polars or datatable:
* https://github.com/p…
Comment: Error in converting vcf file to plink format
by
Madhawa
▴
10
Thank you so much! Will try to run the analysis with the file and check it! Thanks again!!
Comment: Error in converting vcf file to plink format
by
GenoMax
120k
As long as the file is not empty it should be good.
Comment: Error in converting vcf file to plink format
by
Madhawa
▴
10
____________________________________________
I just tried with plink 1.9 and it worked pretty well!!!! Thank you once again!
Comment: Error in converting vcf file to plink format
by
Madhawa
▴
10
Thank you so much for your reply with clarification. I will try with plink 1.9!
Comment: Error in converting vcf file to plink format
by
chrchang523
9.7k
This error is a consequence of using plink 1.07, which has to load the entire dataset into memory, instead of plink 1.9, which is capable o…
Traffic: 1929 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6