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Comment: Is it possible to do DGE analysis using log 2 normalized data with EdgeR ?
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Adaline.D
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That explains a lot to me. Thank you, seidel! They used Affymetrix Human Gene 1.0 ST Array chips.
Hope you have a wonderful day.
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Thank you so much it worked.
I highly appreciate your help.
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Try adding the following line of code:
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Thank you for your support.
I tried the command
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The `vg mpmap` subcommand has features for mapping RNA-seq data to a graph. We describe in more detail in [this publication][1], including …
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From the error you may need to specify the file path instead of passing it the imported data.
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i am not sure how about the data input format but 'hisat2' is able to 'align rna-seq to a population reference'. this may be a little diffe…
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What technology is the GEO data set derived from? Signal intensity implies a fluorescence read out (i.e. microarray). If that's the case, y…
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As I said above the adapters are each ~60 bp long so they add ~120 bp (5' and 3' end adapters) to the length of the DNA fragment. What you …
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I'm not claiming that all fragment lengths are exactly 50, the typical range for my data is 45-60. However, my read lengths are all 150, so…
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Illumina libraries are made by adding adapters to the ends of DNA fragment(s). Those adapters themselves are about 60 nucleotides long. Not…
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I really like using [the R/Bioconductor package TCGAbiolinks][1], it gives you clinical and expression data by patient ID.
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