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1,000 results • Page
1 of 20
Sort: Views
Rank
Views
Votes
Replies
23
votes
22
replies
40k
views
6 follow
Converting VCF to PLINK .bed binary fileset to check for pedigree errors with KING: How do conversion tools make the PLINK .fam file, without asking …
plink
vcf
fam
gatk
vcftools
updated 6 months ago by
Nicole
• 0 • written 5.1 years ago by
gaelgarcia
▴ 250
4
votes
13
replies
27k
views
6 follow
[main_samview] fail to read the header from sample.bam
alignment
updated 11 months ago by
Qboy
• 0 • written 5.3 years ago by
sambioinfo2018
▴ 20
20
votes
15
replies
26k
views
8 follow
Converting SNP from chr:pos to rs number using PLINK?
plink
SNP
updated 10 months ago by
Ram
39k • written 7.4 years ago by
dam4l
▴ 190
0
votes
3
replies
14k
views
How to choose a TPM cut-off point
RNA-Seq
transcript
tpm
updated 9 months ago by
Ram
39k • written 7.6 years ago by
amyfm
▴ 10
2
votes
4
replies
14k
views
TRIMMOMATRIC Nextera trimming
next-gen
updated 7 months ago by
Ram
39k • written 7.9 years ago by
meekadi
▴ 10
0
votes
4
replies
12k
views
Unable to install XLconnect package in R studio version 3.2.1
R
updated 8 months ago by
Ram
39k • written 7.8 years ago by
Debbie
▴ 10
2
votes
4
replies
12k
views
Run BLAST on Linux terminal
ncbi
nBLAST
linux
blast
updated 9 months ago by
Ram
39k • written 7.7 years ago by
Abdul Rafay Khan
★ 1.2k
8
votes
5
replies
11k
views
samtools tview symbols
samtools
updated 7 months ago by
Ram
39k • written 7.9 years ago by
biolab
★ 1.4k
0
votes
4
replies
11k
views
Convert .gbf file to .gbk or .gff
gbk
gff
gbf
updated 4 months ago by
Ram
39k • written 8.1 years ago by
che.bellaj
• 0
2
votes
3
replies
11k
views
converting maf to vcf
Exome
maf2vcf
updated 4 months ago by
Ram
39k • written 8.1 years ago by
ashishchahl
• 0
1
vote
8
replies
10k
views
How to update rlang in R?
rlang
R
8 months ago by
Amr
▴ 140
3
votes
1
reply
10k
views
Negative P-Values
gene
genome
next-gen-sequencing
updated 9 months ago by
Ram
39k • written 7.8 years ago by
stevenlang123
▴ 200
3
votes
16
replies
10.0k
views
combining z-scores into a single z-score value
excel
R
statistics
updated 9 days ago by
Ram
39k • written 4.2 years ago by
Star
▴ 60
0
votes
0
replies
9.5k
views
pheatmap row annotation and title font size questions
heatmap
pheatmap
updated 4 months ago by
Ram
39k • written 8.0 years ago by
neokao
• 0
2
votes
8
replies
9.3k
views
Size of typical genomic data
genomic
updated 10 weeks ago by
Ram
39k • written 5.1 years ago by
Nicolas Rosewick
10k
4
votes
6
replies
8.7k
views
Spades assembler output
Assembly
updated 10 months ago by
Ram
39k • written 7.4 years ago by
elbecerrasoto
▴ 30
3
votes
8
replies
8.3k
views
Quantile normalizing prior to or after TPM scaling?
RNAseq
normalization
updated 3 months ago by
Kevin Blighe
85k • written 5.5 years ago by
mforde84
★ 1.4k
18
votes
4
replies
8.2k
views
How To Find Rna-Seq Data Of Published Papers?
geo
next-gen
RNA-seq
updated 3 months ago by
Ram
39k • written 9.8 years ago by
user
▴ 930
5
votes
4
replies
7.9k
views
GFF3 to GTF conversion - 9th column
gtf
NCBI
gff3
featureCounts
updated 10 months ago by
Ram
39k • written 7.4 years ago by
mrodrigues.fernanda
▴ 50
2
votes
7
replies
7.9k
views
linux 'cat' command merge fasta files without headers
fasta
linux
updated 3 months ago by
Ram
39k • written 9.0 years ago by
esterbuiate
• 0
1
vote
2
replies
7.8k
views
vcf compare between 2 vcf files using vcf tools
vcftools
updated 12 weeks ago by
Ram
39k • written 6.5 years ago by
bioguy24
▴ 230
2
votes
2
replies
7.8k
views
How to filter out special sequences from a fasta file based on sequence IDs txt
fasta
updated 9 months ago by
Ram
39k • written 7.7 years ago by
Ginsea Chen
▴ 130
2
votes
1
reply
7.6k
views
ROH by PLINK
plink
ROH
updated 4 months ago by
Ram
39k • written 8.1 years ago by
afadda
▴ 20
3
votes
7
replies
7.3k
views
RNA-STAR, mapping problem (number of reads)
RNA-Seq
updated 11 months ago by
Ram
39k • written 7.3 years ago by
mohikran
• 0
1
vote
2
replies
7.3k
views
Converting vcf to fasta format
fasta
samtools
vcf
alignment
next-gen
updated 5 months ago by
Ram
39k • written 8.0 years ago by
JW
▴ 10
4
votes
9
replies
7.2k
views
bcftools consensus command
vcf
bcftools
updated 11 weeks ago by
Ram
39k • written 3.4 years ago by
Begonia_pavonina
▴ 100
4
votes
2
replies
7.2k
views
PLINK Merge error: File write failure
plink
1000genomes
updated 9 months ago by
Ram
39k • written 7.6 years ago by
aritra90
▴ 70
1
vote
8
replies
7.1k
views
Plotting different gene ontology categories in a barplot
HI
Gene ontology
R
updated 10 months ago by
zx8754
11k • written 2.3 years ago by
aradhana
• 0
0
votes
10
replies
6.9k
views
Error: reads file does not look like a fastq file
fastq
bowtie2
ChIP-Seq
updated 11 weeks ago by
Ram
39k • written 6.7 years ago by
addilynn.beach
▴ 40
2
votes
7
replies
6.9k
views
Bowtie2 run out of memory
software-error
alignment
bowtie2
updated 4 months ago by
Ram
39k • written 8.1 years ago by
anon
▴ 50
3
votes
5
replies
6.8k
views
Visualising the number of overlapping peaks in ChIP-seq studies
ChIP-Seq
updated 10 months ago by
Ram
39k • written 7.3 years ago by
James Ashmore
★ 3.4k
0
votes
0
replies
6.8k
views
Error in grid.Call.graphics(L_setviewport, vp, TRUE) : non-finite location and/or size for viewport
gviz
updated 10 months ago by
Ram
39k • written 7.7 years ago by
nasim.zeeshan25
• 0
4
votes
11
replies
6.6k
views
Correct way to calculate VAF (Variant allele fraction) from a VCF file
VCF
snp
9 months ago by
prasundutta87
▴ 650
5
votes
22
replies
6.6k
views
SVM for classified gene expression data
R
svm
microarray
updated 10 months ago by
Ram
39k • written 7.4 years ago by
Shaurya Jauhari
▴ 50
0
votes
2
replies
6.6k
views
Illumina adapter diagram
illumina
sequencing
adapter-trimming
updated 11 months ago by
Ram
39k • written 8.2 years ago by
pjkriebel
• 0
4
votes
8
replies
6.5k
views
Error while demultipleaxing .bcl to .fastq files
sequencing
genome
alignment
updated 8 months ago by
Ram
39k • written 7.7 years ago by
ravi.uhdnis
▴ 220
10
votes
5
replies
6.5k
views
how to remove asterisk characters from a translated sequences (fasta format)?
sequencing
Assembly
alignment
updated 10 months ago by
Ram
39k • written 7.8 years ago by
seta
★ 1.8k
5
votes
11
replies
6.4k
views
Error while running miso
RNA-Seq
splicing
updated 10 months ago by
Ram
39k • written 7.8 years ago by
priyankamaripuri
▴ 40
3
votes
5
replies
6.4k
views
Converting Vcftools output to R readable format
vcf
SNP
R
vcftools
updated 4 months ago by
Ram
39k • written 8.1 years ago by
pifferdavide
▴ 100
4
votes
45
replies
6.3k
views
SAM file wrong? help with validatesamfile
EXOME
updated 9 weeks ago by
Ram
39k • written 7.0 years ago by
cristina_sabiers
▴ 110
0
votes
0
replies
6.3k
views
E-values calculation (MEME)
meme
updated 4 months ago by
Ram
39k • written 8.1 years ago by
anahochmanova
▴ 10
2
votes
10
replies
6.2k
views
fq.gz file use
BioEdit
R
updated 11 weeks ago by
Ram
39k • written 4.3 years ago by
choi.yisoo.hi
• 0
8
votes
2
replies
6.2k
views
Differential gene expression analysis in Python
python
R
updated 4 months ago by
Ram
39k • written 19 months ago by
Leendert
▴ 30
2
votes
1
reply
6.2k
views
BEDgraph to BED/bam
bed
updated 8 months ago by
Ram
39k • written 7.8 years ago by
wanziyi89
▴ 60
3
votes
1
reply
6.1k
views
how is the output of bcftools stats calculated?
bcftools
updated 8 months ago by
Ram
39k • written 7.8 years ago by
james.blackshaw
▴ 20
1
vote
7
replies
6.1k
views
Panther pathway Database
gene
updated 10 months ago by
Ram
39k • written 7.4 years ago by
nvayin
• 0
6
votes
13
replies
6.0k
views
DESeq2 and edgeR - no agreement between results
RNA-Seq
edgeR
DESeq2
updated 10 months ago by
Ram
39k • written 7.5 years ago by
ilyco
▴ 60
1
vote
6
replies
6.0k
views
bedGRAPH files from MACS2 ChIP-seq analysis don't reflect peaks called in peak.xls file
ChIP-Seq
updated 9 months ago by
Ram
39k • written 7.7 years ago by
nash.claire
▴ 470
2
votes
5
replies
5.9k
views
How to normalize gene expression values for finding similar genes
gene
RNA-Seq
updated 11 months ago by
Ram
39k • written 8.1 years ago by
ciclustigu
▴ 10
1
vote
1
reply
5.9k
views
different color for highlighting genes in Manhattan plot in qqman
R
genome
updated 8 months ago by
Ram
39k • written 7.7 years ago by
Line Heylen
▴ 40
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