23
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22
replies
40k
views
6 follow
4
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13
replies
27k
views
6 follow
updated 11 months ago by
Qboy
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0
•
written 5.3 years ago by
sambioinfo2018
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20
20
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15
replies
26k
views
8 follow
0
votes
3
replies
14k
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2
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4
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14k
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0
votes
4
replies
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2
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4
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8
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5
replies
11k
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0
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4
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11k
views
updated 4 months ago by
Ram
39k
•
written 8.1 years ago by
che.bellaj
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0
2
votes
3
replies
11k
views
updated 4 months ago by
Ram
39k
•
written 8.1 years ago by
ashishchahl
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0
1
vote
8
replies
10k
views
3
votes
1
reply
10k
views
updated 9 months ago by
Ram
39k
•
written 7.8 years ago by
stevenlang123
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200
3
votes
16
replies
10.0k
views
0
votes
0
replies
9.5k
views
2
votes
8
replies
9.3k
views
updated 10 weeks ago by
Ram
39k
•
written 5.1 years ago by
Nicolas Rosewick
10k
4
votes
6
replies
8.7k
views
updated 10 months ago by
Ram
39k
•
written 7.4 years ago by
elbecerrasoto
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30
3
votes
8
replies
8.3k
views
updated 3 months ago by
Kevin Blighe
85k
•
written 5.5 years ago by
mforde84
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1.4k
18
votes
4
replies
8.2k
views
5
votes
4
replies
7.9k
views
updated 10 months ago by
Ram
39k
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written 7.4 years ago by
mrodrigues.fernanda
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50
2
votes
7
replies
7.9k
views
updated 3 months ago by
Ram
39k
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written 9.0 years ago by
esterbuiate
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0
1
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2
replies
7.8k
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2
votes
2
replies
7.8k
views
updated 9 months ago by
Ram
39k
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written 7.7 years ago by
Ginsea Chen
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130
2
votes
1
reply
7.6k
views
3
votes
7
replies
7.3k
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vote
2
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4
votes
9
replies
7.2k
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updated 11 weeks ago by
Ram
39k
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written 3.4 years ago by
Begonia_pavonina
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100
4
votes
2
replies
7.2k
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1
vote
8
replies
7.1k
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votes
10
replies
6.9k
views
updated 11 weeks ago by
Ram
39k
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written 6.7 years ago by
addilynn.beach
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40
2
votes
7
replies
6.9k
views
3
votes
5
replies
6.8k
views
updated 10 months ago by
Ram
39k
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written 7.3 years ago by
James Ashmore
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3.4k
0
votes
0
replies
6.8k
views
updated 10 months ago by
Ram
39k
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written 7.7 years ago by
nasim.zeeshan25
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0
4
votes
11
replies
6.6k
views
9 months ago by
prasundutta87
▴
650
5
votes
22
replies
6.6k
views
updated 10 months ago by
Ram
39k
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written 7.4 years ago by
Shaurya Jauhari
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50
0
votes
2
replies
6.6k
views
4
votes
8
replies
6.5k
views
updated 8 months ago by
Ram
39k
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written 7.7 years ago by
ravi.uhdnis
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220
10
votes
5
replies
6.5k
views
5
votes
11
replies
6.4k
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updated 10 months ago by
Ram
39k
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written 7.8 years ago by
priyankamaripuri
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40
3
votes
5
replies
6.4k
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4
votes
45
replies
6.3k
views
updated 9 weeks ago by
Ram
39k
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written 7.0 years ago by
cristina_sabiers
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110
0
votes
0
replies
6.3k
views
updated 4 months ago by
Ram
39k
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written 8.1 years ago by
anahochmanova
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10
2
votes
10
replies
6.2k
views
updated 11 weeks ago by
Ram
39k
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written 4.3 years ago by
choi.yisoo.hi
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0
8
votes
2
replies
6.2k
views
2
votes
1
reply
6.2k
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3
votes
1
reply
6.1k
views
updated 8 months ago by
Ram
39k
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written 7.8 years ago by
james.blackshaw
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20
1
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7
replies
6.1k
views
6
votes
13
replies
6.0k
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1
vote
6
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6.0k
views
updated 9 months ago by
Ram
39k
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written 7.7 years ago by
nash.claire
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470
2
votes
5
replies
5.9k
views
updated 11 months ago by
Ram
39k
•
written 8.1 years ago by
ciclustigu
▴
10
1
vote
1
reply
5.9k
views
updated 8 months ago by
Ram
39k
•
written 7.7 years ago by
Line Heylen
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40
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Comment: conda: command not found: gatk.
by
bestone
▴
10
oops I didn't know I was going to evaluate them there, thanks for the warning, now I will evaluate them all. pls, could you pls with this i…
Comment: conda: command not found: gatk.
by
Pierre Lindenbaum
155k
> how about all your previous questions ? take a time to validate the good answers
Comment: conda: command not found: gatk.
by
bestone
▴
10
I was using gatk before, but conda env create -n gatk -f gatkcondaenv.yml didn't run this command, so I wanted to delete gatk and install t…
Comment: conda: command not found: gatk.
by
Pierre Lindenbaum
155k
how about all your previous questions ? take a time to validate the good answers (green mark on the left).
https://www.biostars.org/p/9565…
Answer: No @hd header returned in sam file when running bwa mem
by
Pierre Lindenbaum
155k
the HD header is not generated by bwa, but you can add it using awk:
bwa (...) | awk '(NR==1) {printf("@HD\tVN:1.6\tSO:unknown\n");}{…
Comment: Ensembl vep singularity
by
Kiran
▴
80
Hi I also pulled SIF image from docker,, Now how do i execute the VEP from singularity ?
Answer: No @hd header returned in sam file when running bwa mem
by
GokalpC
▴
80
Your sam file is not coordinate sorted or converted to a bam. @HD tags come after a secondary tool such as samtools view or sort.
ANGSD…
Comment: Mapping a predicted sequence to a genome
by
Mensur Dlakic
★
23k
It may or may not, depending on the exact organism. For example, baker's yeast has introns but not many, and most genes in its genome don't…
Comment: Mapping a predicted sequence to a genome
by
Andy
•
0
Thank you for your answer! If the organism I am studying has introns, will blastn still be sufficient?
Answer: Mapping a predicted sequence to a genome
by
Mensur Dlakic
★
23k
If we are talking about organisms without introns, it is very simple. A tool to use is `tblastn` which can be accessed from the [**main BLA…
Comment: How to get information about promoter from bulk-RNAseq?
by
rfran010
▴
170
I'll just add what I did with my own dataset of ribo depleted RNA-seq:
I took predicted enhancer-promoter interaction datasets from UCSC a…
Answer: How to get information about promoter from bulk-RNAseq?
by
rfran010
▴
170
What type of RNA-seq data do you have?
With polyA, I think it will be hard to incorporate enhancer info without additional datasets.
…
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