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this is the code which I have written:
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There are plenty of variants that don't exist in gnomAD - only 759M SNPs (chr-pos-ref-alt) out of a possible 9B. Your question is a bit con…
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Hi, Thanks for the help. I am just a beginner and the code was written by someone else, I am trying to modify it for myself. I will try to …
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Using `EntrezDirect` ([**LINK**][1]):
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I had actually accidentally used ranks instead of Entrez gene ids (but switched later to human Ensembl gene ids). However, without your com…
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Yes sure. These are all gene IDs BZRAP1, C19orf60, TCEB3 and so on.
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I tried the commands you recommended in the bash/command line. When I tried `find "${bam_directory}" -type f -name "*.bam" | xargs samtools…
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Can you provide some examples of HUGO ID's you are unable to convert?
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GTF file includes gene models/annotation information.
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then test each files.
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The problem here is not the ties, but that your gene IDs in the pathway list (ensemble human genes) does not match the names of the stats v…
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I did not use the space between the `-u` flag and the `-o` flag (the blank line) but I did do what you recommended:
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how about simply trying:
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Yes, I know also need a GTF file. So the GTF file will include RNA information?
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I will try and figure it out on my own given what you all have mentioned. Thank you for your time.
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