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736 results • Page
1 of 15
Sort: Votes
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Views
Votes
Replies
18
votes
4
replies
8.0k
views
How To Find Rna-Seq Data Of Published Papers?
geo
next-gen
RNA-seq
updated 22 days ago by
Ram
38k • written 9.6 years ago by
user
▴ 930
14
votes
5
replies
2.7k
views
bioinformatics basic training
genome
updated 8 days ago by
Ram
38k • written 8.3 years ago by
f.muoghalu
• 0
10
votes
6
replies
2.5k
views
which language to use for such a bioinformatics web services infrastructure?
web-services
java
updated 11 hours ago by
Ram
38k • written 7.8 years ago by
lait
▴ 170
8
votes
12
replies
2.4k
views
Use BLAST Command Line Applications to run a folder of many sequences against a database
BLAST
updated 4 days ago by
Ram
38k • written 19 months ago by
daver.v
▴ 30
8
votes
25
replies
1.9k
views
construction of a database
sql
noSQL
neo4j
database
updated 15 hours ago by
Ram
38k • written 22 months ago by
Debut
▴ 20
7
votes
10
replies
1.1k
views
col as names [solved]
R
updated 4 days ago by
Ram
38k • written 4.0 years ago by
demoraesdiogo2017
▴ 90
7
votes
4
replies
1.7k
views
useful and freely available softwares for Bioinformatics
software
updated 4 days ago by
Ram
38k • written 8.0 years ago by
Mo
▴ 920
7
votes
4
replies
1.2k
views
So many Zeros (read counting)_NGS sequence analysis with R / Bioconductor: RNA-Seq workflow
alignment
RNA-Seq
R
updated 7 days ago by
Ram
38k • written 4.7 years ago by
healing80
• 0
6
votes
13
replies
603
views
Error with STAR
STAR
updated 12 days ago by
Ram
38k • written 15 days ago by
Chris
▴ 70
6
votes
12
replies
1.1k
views
Good tutorials/textbooks/articles to introduce biomarker discovery to a biologist?
r
biomarker
updated 4 days ago by
Ram
38k • written 4.2 years ago by
english.server
▴ 290
6
votes
7
replies
825
views
to mark the duplicates
Assembly
updated 8 days ago by
Ram
38k • written 3.8 years ago by
manubiomed20
▴ 10
6
votes
6
replies
3.5k
views
Already Working In The Field Of Bioinformatics With A Bachelors, Is A Masters Degree Worth The Time?
masters
career
updated 21 days ago by
Ram
38k • written 9.5 years ago by
ashah90
▴ 30
6
votes
3
replies
3.1k
views
Comment On The Introduction Of A Bioinformatics Paper
publication
bayesian-model
updated 15 days ago by
Ram
38k • written 9.0 years ago by
Faheemmitha
▴ 210
6
votes
12
replies
1.2k
views
VCF files 101 - for people from non Bioinformatics Background
vcf
sequencing
genome
variant-calling
updated 8 days ago by
Ram
38k • written 2.6 years ago by
akshaykum684
▴ 20
6
votes
11
replies
681
views
Calculate RPKM
RPKM
1 day ago by
Chris
▴ 70
6
votes
9
replies
4.7k
views
Best Possible set of Python interview questions for Bioinformatics, that a recruiter can ask?
python
updated 1 day ago by
Ram
38k • written 7.9 years ago by
gaurav.singh
▴ 10
6
votes
6
replies
907
views
RNA-seq pipeline for degraded RNA
RNA-Seq
degraded
pipeline
alignment
updated 15 days ago by
yussab
▴ 80 • written 2.1 years ago by
oludhe
▴ 60
5
votes
6
replies
592
views
Filter out Bam not overlapping with Bed File (keeping a read and its mate)?
mates
bed
bam
samtools
8 days ago by
Eliveri
▴ 320
5
votes
6
replies
408
views
I can not allocate ram memory for WSL2
WSL2
7 days ago by
ailton
• 0
5
votes
4
replies
500
views
Converting Bam file to Fasta (Zipped)
samtools
bamtofastq
bedtools
paired
8 days ago by
Eliveri
▴ 320
5
votes
11
replies
3.0k
views
Convert Plink to Arlequin
software-error
plink
Arlequin
PGDSpider
updated 7 days ago by
Ram
38k • written 4.9 years ago by
HG
▴ 30
4
votes
3
replies
679
views
Bioinformatics courses online?
courses
updated 14 days ago by
Ram
38k • written 19 months ago by
valentinavan
▴ 50
4
votes
8
replies
1.3k
views
6 follow
building snpEff database
snpEff
updated 28 days ago by
Ram
38k • written 10 months ago by
aabhordia
▴ 20
4
votes
5
replies
507
views
Need help to perform survival analysis
survival
analysis
mirna
updated 9 days ago by
Mensur Dlakic
★ 23k • written 10 days ago by
Bhanu
• 0
4
votes
2
replies
298
views
I want to print only those lines which contain non repetitive amino acid sequences
Linux
python
awk
sed
updated 29 days ago by
Ram
38k • written 4 weeks ago by
muhammadhassam8
• 0
4
votes
1
reply
306
views
Batch effect correction methods (Seurat v3, Harmony, fastMNN, Liger)
integration
Batch
seurat
fastMNN
Harmony
22 days ago by
re_raz
▴ 50
4
votes
4
replies
2.5k
views
What Statistical Test Is Appropriate When Comparing Rna-Seq Data Obtained From Biological Replicates Mapped To Different Genomes
RNA-seq
updated 26 days ago by
Ram
38k • written 10.2 years ago by
xs57
▴ 20
3
votes
6
replies
4.3k
views
Why Do I Get A Makeblastdb Error: File Does Not Match Input Format Type, Default Input Type Is Fasta
genomics
blast-plus
updated 20 days ago by
Ram
38k • written 9.3 years ago by
alok.helix
▴ 120
3
votes
2
replies
338
views
A way to find which genome builds a package supports
Bioconductor
genome
R
build
updated 9 days ago by
ATpoint
70k • written 11 days ago by
dshcherbo
• 0
3
votes
3
replies
391
views
SamSort gatk invalid argument / no space left on disk
picard
gatk
samsort
nextflow
8 days ago by
Eliveri
▴ 320
3
votes
1
reply
2.1k
views
reference and effective allele
snp
updated 12 days ago by
Ram
38k • written 8.3 years ago by
alex.crimi
• 0
3
votes
4
replies
3.3k
views
Mauve File Format
ncbi
gb
mauve
gbk
updated 4 days ago by
Ram
38k • written 5.4 years ago by
trionanibrannacht
• 0
3
votes
5
replies
1.7k
views
htseq counts to make matrix in Rstudio
RNA-Seq
updated 12 days ago by
Ram
38k • written 2.6 years ago by
simplysarah
• 0
3
votes
5
replies
1.9k
views
Cellranger count command for single end fastq
RNA-Seq
sequencing
updated 21 days ago by
Ram
38k • written 2.3 years ago by
sidrah.maryam
▴ 40
3
votes
2
replies
124
views
Power analysis for patient samples
RNA-seq
12 hours ago by
aropri
▴ 130
3
votes
3
replies
332
views
Retrieving information from FASTA file
NGS
FASTA
VCF
updated 10 hours ago by
Ram
38k • written 12 months ago by
Maryam
▴ 10
3
votes
2
replies
275
views
How to find all of the new RNA splices from bulk RNA-seq data?
RNA-seq
RNA-splices
updated 21 days ago by
dthorbur
▴ 410 • written 23 days ago by
Dan
▴ 70
3
votes
1
reply
192
views
analysing nanopore amplicon data
amplicon
genotyping
nanopore
ampliSAS
updated 20 days ago by
dthorbur
▴ 410 • written 21 days ago by
khoojj
▴ 20
3
votes
4
replies
461
views
Genome Reference Consortium Human Build - Transcriptome Size Query
GRC
updated 4 days ago by
Ram
38k • written 10 months ago by
Oligo96
• 0
3
votes
3
replies
329
views
Same pipeline produces different results
Cellranger
scRNaseq
genome
countmatrix
updated 28 days ago by
Jesse
▴ 500 • written 4 weeks ago by
Tadeoye
▴ 30
3
votes
6
replies
1.7k
views
Methods and type datastructures use by Splign?
data-structure
splign
updated 15 hours ago by
Ram
38k • written 6.4 years ago by
Esaie
▴ 160
3
votes
4
replies
473
views
Changing Temporary File Location for Local BLASTP to nr Database
protein
blast
nr
updated 1 day ago by
Ram
38k • written 10 weeks ago by
katieostrouchov
▴ 20
3
votes
3
replies
1.1k
views
What is dbsnp file and how can I find it?
SNP
updated 8 days ago by
Ram
38k • written 2.2 years ago by
dsh.shadi
• 0
2
votes
4
replies
405
views
sRNA seq analysis after trimming adapter
trimmomatic
sRNApipe
sRNAseq
28 days ago by
Ramon
• 0
2
votes
2
replies
1.1k
views
How to obtain lineage information from taxid?
euitls
taxid2lineage
accession2taxid
updated 4 days ago by
Ram
38k • written 2.4 years ago by
6schulte
▴ 30
2
votes
10
replies
1.2k
views
multiple FASTA sequnces in to one full sequnce according to their chromosome number
NGS
FASTA
bam
updated 4 days ago by
Ram
38k • written 4.0 years ago by
Anu
• 0
2
votes
0
replies
1.5k
views
Any relation between pan genome and genome plasticity?
genome
gene
sequence
updated 5 days ago by
Ram
38k • written 8.1 years ago by
Loub
▴ 20
2
votes
7
replies
7.7k
views
linux 'cat' command merge fasta files without headers
fasta
linux
updated 15 days ago by
Ram
38k • written 8.8 years ago by
esterbuiate
• 0
2
votes
1
reply
189
views
is this good atac seq counts
ATAC-seq
updated 20 days ago by
Ram
38k • written 20 days ago by
alwayshope
• 0
2
votes
4
replies
4.7k
views
What Is A Correct Way To Assess Batch Effect?
batch-effect
updated 25 days ago by
Ram
38k • written 9.8 years ago by
vanzetti
▴ 60
736 results • Page
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Gene Set Enrichment Analysis
Can I sort my bam files with Picard MergeSamFiles?
Answer: Problem generating a .vcf after upgrade of samtools and bcftools
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Comment: Can someone help me with searching overlapping values between two files?
by
mxm189
• 0
I tried some stuff but it didnt work. I used ChatGPT, because I'm not good at this. I tried sorting of the two files first # Sort the inp…
Comment: Survival analysis with gene expression
by
krushnach80
★ 1.1k
Hello @kevinblighe I would like to get your help in [this][1] [1]: https://www.biostars.org/p/9558148/
Comment: activity of unloaded/unassembled Tn5
by
callumjcparr
• 0
![enter image description here][1] ![enter image description here][2] ![enter image description here][3] ![enter image description he…
Answer: How to implement this two-stage one-to-many workflow using WDL?
by
Ruben
• 0
> Unfortunately, as far as I can tell, WDL provides no support for iterating over the contents of a directory. (I find this shocking. I con…
Answer: activity of unloaded/unassembled Tn5
by
callumjcparr
• 0
So I hope someone is still interested in this. We have taken to preparing recombinant Tn5 now as it's much cheaper than commercial suppli…
Comment: RNA-SEQ
by
ali
• 0
thanks for your helping
Comment: TSS of protein coding genes
by
ConvolutedGenome
▴ 10
I am quite confused with GENCODE GTF file, So, within the GENCODE GTF file, I noticed that each (protein-coding) gene has multiple "transc…
Comment: Recommendation for (Alternative) Splicing analysis packages for bulk RNA-seq da
by
iraun
5.8k
Hi! I personally use [SplAdder][1], in case you want to add it to your list :). [1]: https://github.com/ratschlab/spladder
Answer: Problem generating a .vcf after upgrade of samtools and bcftools
by
Andy
• 0
Really the only needed, that help worked, thank's
Comment: Active enhancers for mm39
by
seidel
11k
Just curious what you mean by "active" enhancers. Enhancers are active in a given context (e.g. cell type developmental state, etc.), and m…
Comment: Creating loop for read groups using Picard
by
ntsopoul
▴ 20
try absolute paths navigate to the directory with cd and use pwd to get the absolute directory.
Comment: how to create interacting Hi-C peaks
by
rheab1230
▴ 140
Thank you. I will use this package since I am more familiar with R
Comment: how to create interacting Hi-C peaks
by
rheab1230
▴ 140
thank you. i will go through it
Comment: Fastqc report analysis
by
npavliukovec
• 0
Yeah, after trimming and fastqc I will have to generate MultiQC plots and after do mapping with reference genome. As I know, for eukaryotes…
Comment: My fastq files(paired end) have different read number
by
kimgeng
• 0
Oh, I see, Thank you however, I want to make vcf files with gatk haplotypecaller and GenotypeGVCFs. But I got some problems I have about 2.…
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