3
votes
4
replies
1.4k
views
3
votes
4
replies
3.5k
views
3
votes
3
replies
337
views
3
votes
1
reply
197
views
3
votes
6
replies
4.3k
views
Why Do I Get A Makeblastdb Error: File Does Not Match Input Format Type, Default Input Type Is Fasta
updated 27 days ago by
Ram
38k
•
written 9.3 years ago by
alok.helix
▴
120
3
votes
4
replies
269
views
7 days ago by
krushnach80
★
1.1k
3
votes
2
replies
353
views
3
votes
5
replies
1.9k
views
updated 28 days ago by
Ram
38k
•
written 2.3 years ago by
sidrah.maryam
▴
40
3
votes
1
reply
2.1k
views
updated 19 days ago by
Ram
38k
•
written 8.3 years ago by
alex.crimi
•
0
3
votes
5
replies
1.7k
views
updated 19 days ago by
Ram
38k
•
written 2.6 years ago by
simplysarah
•
0
3
votes
2
replies
246
views
3
votes
2
replies
506
views
updated 6 days ago by
Ram
38k
•
written 23 months ago by
vanessagpds
▴
10
3
votes
6
replies
1.7k
views
3
votes
4
replies
336
views
5 days ago by
Evan
▴
180
3
votes
0
replies
1.8k
views
2
votes
3
replies
347
views
2
votes
2
replies
1.2k
views
2
votes
2
replies
690
views
2
votes
2
replies
3.3k
views
2
votes
10
replies
1.2k
views
2
votes
1
reply
596
views
updated 11 days ago by
Ram
38k
•
written 2.2 years ago by
flisosergio
•
0
2
votes
0
replies
1.5k
views
2
votes
3
replies
420
views
2
votes
4
replies
447
views
2
votes
8
replies
531
views
2
votes
2
replies
315
views
updated 21 days ago by
Ram
38k
•
written 6 weeks ago by
R.T. Canterbury
▴
10
2
votes
3
replies
219
views
updated 5 days ago by
Darked89
4.2k
•
written 7 days ago by
phillip.brassington
▴
10
2
votes
3
replies
508
views
updated 7 days ago by
Ram
38k
•
written 13 months ago by
kelsey.e.witt
•
0
2
votes
2
replies
255
views
updated 18 days ago by
GenoMax
127k
•
written 18 days ago by
gkarabiyik
•
0
2
votes
0
replies
380
views
2
votes
8
replies
9.1k
views
updated 1 day ago by
Ram
38k
•
written 4.9 years ago by
Nicolas Rosewick
10k
2
votes
0
replies
2.0k
views
updated 29 days ago by
Ram
38k
•
written 9.8 years ago by
anika.menon22
▴
190
2
votes
10
replies
5.9k
views
updated 11 days ago by
Ram
38k
•
written 4.1 years ago by
choi.yisoo.hi
•
0
2
votes
2
replies
910
views
updated 29 days ago by
Ram
38k
•
written 9.7 years ago by
mathini.ilancheran
▴
10
2
votes
5
replies
572
views
updated 7 days ago by
igor
13k
•
written 11 days ago by
e.r.zakiev
▴
30
2
votes
2
replies
317
views
2
votes
0
replies
490
views
2
votes
4
replies
250
views
2
votes
12
replies
549
views
2
votes
2
replies
1.3k
views
updated 6 days ago by
Ram
38k
•
written 5.0 years ago by
ArusjakGevorgyan
▴
20
2
votes
3
replies
2.4k
views
2
votes
1
reply
196
views
updated 27 days ago by
Ram
38k
•
written 28 days ago by
alwayshope
•
0
2
votes
2
replies
79
views
2
votes
1
reply
1.4k
views
2
votes
3
replies
1.9k
views
2
votes
4
replies
586
views
updated 11 days ago by
Ram
38k
•
written 10 months ago by
cdeantoneo31
▴
10
2
votes
0
replies
1.2k
views
2
votes
3
replies
2.3k
views
2
votes
3
replies
333
views
Recent Votes
Recent Locations •
All
United States, just now
Bologna, 1 minute ago
Austria, 1 minute ago
Poland, 2 minutes ago
Netherlands, 3 minutes ago
United States, 3 minutes ago
Germany, 4 minutes ago
Recent Awards •
All
Popular Question to
Anand Rao
▴
550
Popular Question to
Fizzah
▴
20
Scholar to
Ben_Ensembl
★
2.2k
Popular Question to
zoukai3412085
•
0
Recent Replies
Comment: Suggestion for approaching multiple conditions scRNA-seq
by
rpolicastro
11k
Do you have 2 biological or technical replicates for each condition? Also, you mentioned you didn't find dramatic changes with your analysi…
Comment: GO enrichment analysis
by
Antonio R. Franco
★
5.0k
I had the same situation that I solved using the R package TopGO.
You have already the list of GO terms. Need to follow the instructions i…
Comment: demultiplexing with guppy_basecaller and guppy_barcoder using --detect_mid_stran
by
andres.firrincieli
3.1k
Hi @6f8262bb
I still have no idea what could be the cause but switching to guppy v6.2 solved this problem
Answer: Dealing with very large gene-lists in GSEA
by
Trivas
▴
710
IMO, in those cases you could look at ES instead of NES. Regardless, within the function `fgsea`, you can set the parameters `minSize` and …
Comment: merge vcf.gz file
by
Mali
•
0
file1 = '/sci/labs/orzuk/orzuk/projects/Skin/data/Ichilov/vcfFiles/vcfFiles/eb3_1001_748-gatk-haplotype.final.vcf.gz'
file2 = '/sci/labs/or…
Comment: Which GPU for local Colabfold
by
matt_arnold_bio
•
0
Another giveaway is that when you hit run, it will say either "Running on GPU" or "Running on CPU" in the log output...
![enter image desc…
Answer: Which GPU for local Colabfold
by
matt_arnold_bio
•
0
Hi Arjen,
This is a little while ago now so maybe this is not that helpful but...
You should be able to tell if the GPU is being seen…
Comment: STAR solo set parameters for scrna-seq
by
t.ru
▴
20
it's single cell mars-seq. Yes sorry its a fastq file.
Answer: boxplot issue
by
yura.grabovska
▴
50
First of all, you're not outputting the result of your scale to anything...
t(apply(mat, 1, scale))
colnames(mat) <- rownames(cold…
Comment: STAR solo set parameters for scrna-seq
by
GenoMax
127k
> a fasta file similar to this
This is not a fasta file It is a fastq format file.
Are you sure this is single cell RNAseq data? Looking…
Answer: heatmap issue
by
yura.grabovska
▴
50
Your controls clearly show variable expression for the genes you're plotting so to get them to stick together on the left, you would need t…
Comment: How to demultiplex single end - dual index run - NextSeq 500
by
GenoMax
127k
Correct. This is a single-end dual indexed (8 bp each) run.
Comment: genome annotation [sstart] [send] - how to get protein sequence from gene
by
danfarkas
•
0
Hi shenwei356,
Thanks for the clarification. However, I did try this, and it was not yielding the expected amino acid sequences. This is w…
Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
by
Agamemnon
▴
60
I ran ```samtools view -F 4 -q 42 test.bam | wc -l``` and I get ```6159141```, why is there a discrepancy, as originally only ```5200484```…
Traffic: 2803 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6