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Comment: how to create correlation matrix R
by
satva72
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Thank you for response actually i want to find genes that highly correlated and statistically significant with exp and meth values. cor() c…
Comment: how to create correlation matrix R
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Meisam
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Your question is not clear, you want to draw correlation between the meth and exp values for each gene right? then the example you provided…
Comment: Converting RefSeq protein accession IDs into entreZ IDs
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GenoMax
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`WP*` accession numbers refer to multiple genomes. See: https://www.ncbi.nlm.nih.gov/refseq/about/nonredundantproteins/
The best you could…
Comment: I don't want to believe the Interproscan DB estimated download time.
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EBI appears to be limiting download speed. As you can see this download is 1.4 TB so this is going to take days (I see ~640 KB/s max). You …
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You can plot the points and then use a connecting line for the means.
d <- data.table::fread(text="V1 MEF D…
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Since you asked for a command line solution, you can use UniProt API. Examples and help here: https://www.uniprot.org/help/id_mapping
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Relevant SO post: [Joining means on a boxplot with a line](https://stackoverflow.com/q/3989987/680068)
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gh
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Speed increased up to 200 KB/s. Thank you! I will try to do from my home also.
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I'm pretty sure the results here would be identical.
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please, review all your previous questions and mark them answered if needed . (green tick on the left)
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That's why I said "even when not including backrground genes" in clusterProfiler I still get completely different restults.
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Have a look at `as.cell_data_set` from `SeuratWrappers`
Answer: I don't want to believe the Interproscan DB estimated download time.
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It might be your university proxy server.
You can try with `wget --no-proxy https://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.62-94.…
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Shred
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Boxplot is designed to visualize the range of values towards the median. The average value for each group will be inflated by outlier sampl…
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