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updated 11 weeks ago by
Ram
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written 8.5 years ago by
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updated 8 months ago by
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written 8 months ago by
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17 days ago by
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updated 5 months ago by
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written 7.9 years ago by
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updated 5 months ago by
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written 8.0 years ago by
Niek De Klein
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updated 8 months ago by
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written 8 months ago by
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updated 9 months ago by
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James Ashmore
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Recent Replies
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Actually, I just remembered the perfect paper to illustrate that idea. Look at this: https://pubmed.ncbi.nlm.nih.gov/35976223/. In this man…
Comment: including samples for which group is unknown to help adjust for another variable
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yep! updated my answer to respond to this. i think they ARE biological variables. it is understanding the nature of those variables that is…
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Medeea
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I think the issue is solved with saving the file as .png
There must be a problem with the .jpg format then.
Thanks everyone for the va…
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Try PDF. You won't need dpi for that. Also, do things work well if you use the lower level `png(); ggplot(); dev.off();` sequence instead o…
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The last vcftools release was in 2018. It has been superseded by bcftools for most purposes, and by plink 1.9/2.0 for most analytical func…
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I do not follow, can you please add a chr-start-end example.
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The command with `gawk` is:
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So with 600M reads you will need a minimum of 600GB of RAM per trinity recommendations.
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I don't understand what you're saying. Your allele is different from the ref allele so it needs the sample to support that? Why?
Give me t…
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Sure, but n my case 1/1 the allel is different from the reference allele and it called it as T, for instance. So it needs reads in the samp…
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can you run the same command with just one sample with the flag `--verbose` so we can actually see the error?
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Thank you very much for your suggestion, I have tried with units = "cm" and still it is not saved at desired dpi.
I also ran your example …
Comment: How GATK pipeline called a homozygeous alternate allele (1/1) although one copy
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I've removed irrelevant tags from your post.
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Ref alleles are from the reference genome. GATK doesn't need a read supporting the ref genome on a sample to know what the ref base is at a…
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What does this have to do with Rhapsody scRNA?
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