9
votes
7
replies
711
views
9
votes
4
replies
5.2k
views
7
votes
2
replies
3.1k
views
6
votes
2
replies
2.2k
views
updated 27 days ago by
Ram
37k
•
written 7.7 years ago by
Deepak Tanwar
★
4.2k
5
votes
13
replies
530
views
5
votes
4
replies
3.4k
views
updated 26 days ago by
Ram
37k
•
written 7.7 years ago by
mehran.karimzade
▴
220
5
votes
2
replies
2.2k
views
updated 9 hours ago by
baijiangshan9726
•
0
•
written 2.3 years ago by
blur
▴
270
5
votes
2
replies
455
views
5
votes
2
replies
304
views
updated 25 days ago by
shenwei356
7.8k
•
written 25 days ago by
RT
▴
370
4
votes
3
replies
361
views
4
votes
2
replies
2.1k
views
updated 24 days ago by
Ram
37k
•
written 7.7 years ago by
Jeroen Van Goey
2.3k
4
votes
5
replies
222
views
updated 3 days ago by
GenoMax
125k
•
written 4 days ago by
luzglongoria
▴
40
4
votes
8
replies
678
views
13 days ago by
bhumm
▴
10
4
votes
6
replies
758
views
updated 10 days ago by
Lada
▴
10
•
written 18 months ago by
tiagobellintani
▴
40
4
votes
2
replies
2.3k
views
4
votes
10
replies
3.5k
views
updated 6 days ago by
Ram
37k
•
written 7.7 years ago by
David_emir
▴
460
4
votes
8
replies
1.9k
views
4
votes
4
replies
716
views
3 days ago by
Nico80
▴
60
3
votes
6
replies
2.0k
views
updated 6 hours ago by
Ram
37k
•
written 7.7 years ago by
nathalie.joli
▴
10
3
votes
4
replies
457
views
3
votes
3
replies
2.6k
views
3
votes
4
replies
371
views
3
votes
3
replies
413
views
3
votes
1
reply
169
views
3
votes
7
replies
1.9k
views
updated 25 days ago by
GenoMax
125k
•
written 4.6 years ago by
StudentBio
•
0
3
votes
5
replies
6.2k
views
3
votes
6
replies
535
views
3
votes
4
replies
462
views
21 days ago by
sehriban.buyukkilic
•
0
3
votes
1
reply
186
views
3
votes
2
replies
2.4k
views
3
votes
4
replies
292
views
2
votes
1
reply
272
views
2
votes
1
reply
271
views
updated 28 days ago by
Ram
37k
•
written 28 days ago by
genomics2023
•
0
2
votes
1
reply
2.2k
views
2
votes
3
replies
492
views
26 days ago by
shri.au
•
0
2
votes
4
replies
336
views
7 days ago by
martin.grasshoff
•
0
2
votes
4
replies
252
views
2
votes
5
replies
2.8k
views
updated 25 days ago by
Ram
37k
•
written 7.7 years ago by
Assa Yeroslaviz
★
1.8k
2
votes
1
reply
167
views
updated 24 days ago by
Ram
37k
•
written 11 weeks ago by
Nevergivingup
•
0
2
votes
6
replies
416
views
updated 19 days ago by
Michael Dondrup
52k
•
written 19 days ago by
blur
▴
270
2
votes
7
replies
612
views
updated 17 days ago by
Ram
37k
•
written 18 days ago by
littlemicrobiologist
•
0
2
votes
3
replies
281
views
updated 6 days ago by
ATpoint
68k
•
written 6 days ago by
gorizwango
▴
30
2
votes
4
replies
331
views
2
votes
3
replies
480
views
2
votes
1
reply
368
views
2
votes
3
replies
2.9k
views
2
votes
4
replies
243
views
2
votes
3
replies
716
views
updated 1 day ago by
Angelina_G
•
0
•
written 13 months ago by
adellegreene
•
0
2
votes
2
replies
398
views
2
votes
3
replies
10k
views
updated 7 days ago by
Ram
37k
•
written 7.7 years ago by
ashishchahl
•
0
Recent Votes
Recent Locations •
All
Finland, 1 minute ago
United States, 2 minutes ago
United States, 2 minutes ago
Canada, 4 minutes ago
Canada, 14 minutes ago
India, 14 minutes ago
Grand Line, 18 minutes ago
Recent Awards •
All
Popular Question to
WUSCHEL
▴
660
Scholar to
jared.andrews07
★
14k
Popular Question to
mk
▴
270
Scholar to
chrchang523
9.9k
Recent Replies
Answer: Python Dictionary of Primer3-py Primer Designs
by
barslmn
★
1.2k
You're so close. You can simply loop over sequence dictionaries like you did with the `design_output` and check if the keys with `startswit…
Comment: Unable to install clusterProfiler on Mac M1
by
GenoMax
125k
Have you installed `Xcode` and the command line tools that go with? If not you will need to install those.
Answer: SRA taxonomy analysis
by
Steve
•
0
Thanks @genomax I created an aws glue crawler to pull the data from s3://sra-pub-metadata-us-east-1/sra_tax_analysis_tool/
I wonder if it …
Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
by
demoraesdiogo2017
▴
80
thanks! however, shouldn't it also have a gtf/gff file with the annotations?
Comment: Getting a VCF file from plink .bed, .fam and .bim files
by
hi.there
•
0
Thanks Ram. Yes. I have read all of this documentation before. --file and --bfile. I have actually tried doing the complete liftover be…
Answer: SRA taxonomy analysis
by
GenoMax
125k
This data may only be available using `BigQuery` for [**SRA in cloud**][1].
For more information on querying: https://www.ncbi.nlm.nih.g…
Comment: MesKit error message - Join columns must be present in data.
by
CH1374
•
0
column names for the maf are:
[1] "Hugo_Symbol" "Chromosome" "Start_Position"
[4] "End_Position" "Variant_Classification" "Variant_Type"
[7…
Answer: scaffold assembly inro chromosomal assembly using reference genome
by
samuel.a.odonnell
▴
450
Have a look at ragtag and ragout. I use ragout for smaller assemblies (~20 Mb and less) and ragtag for larger genomes.
Comment: CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRl
by
Ram
37k
I've been meaning to work on a Biostars-specific code formatting manual for a while now but the basic is pretty simple: You can use backtic…
Comment: Multiline Fasta To Single Line Fasta
by
Onur
•
0
Thank you it's also worked for me too.
Best,
Comment: CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRl
by
Estefania
▴
10
Thanks Ram. Could you point to a manual on how to make the post look like yours? I just copy-pasted my R script and this is how it shows in…
Comment: extracting input files form Seurat
by
rasing02
•
0
Yes, I just need the input data so that investigators can use tools other than R to visualize the data in form of viloin plots or feature p…
Comment: Downloading 450k methylation data from GEO
by
GenoMax
125k
I don't think they have provided processed data as a single upload.
Answer: extracting input files form Seurat
by
jared.andrews07
★
14k
You can get the data behind any of the plots easily enough:
```
p <- VlnPlot(Seurat_object, features = "X", group.by = "Names",split.by…
Traffic: 1468 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6