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536 results • Page
3 of 11
Sort: Votes
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Views
Votes
Replies
1
vote
3
replies
1.7k
views
Using Nanoplot to asses quality of ONT data
ONT
Long-read-sequencing
NanoPlot
updated 19 days ago by
Ram
43k • written 2.3 years ago by
matt81rd
▴ 10
1
vote
1
reply
1.7k
views
sea corrected expression matrix
sva
microarrays
batch-effect
updated 8 days ago by
Ram
43k • written 6.8 years ago by
ATCG
▴ 380
1
vote
3
replies
226
views
some error in building kraken2 database
metagenome
kraken2
1 day ago by
Art1ess
• 0
1
vote
0
replies
536
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers
TRINITY
4 days ago by
mathavanbioinfo
▴ 90
1
vote
2
replies
625
views
Nanopore multisample variant calling
SNPs
nanopore
SNP-calling
variants
multisample
26 days ago by
colindaven
6.4k
1
vote
4
replies
2.4k
views
Batch effect control in GWAS data.
Batch-effect
omniexpress
GWAS
GSA
updated 7 days ago by
Ram
43k • written 4.8 years ago by
saksis.rihards
▴ 10
1
vote
1
reply
190
views
Tool for gene function identification
Gene-Function
updated 22 days ago by
Ram
43k • written 23 days ago by
Estevão
• 0
1
vote
2
replies
257
views
Is it possible to see so little adipocyte in white adipose tissue?
scRNA-seq
28 days ago by
kayah
• 0
1
vote
1
reply
174
views
Failed to download data from EBI with ascp
EBI
aspera
updated 13 days ago by
GenoMax
141k • written 13 days ago by
biock
▴ 60
1
vote
1
reply
410
views
Long reads Annotation
long-reads
pacbio
updated 19 days ago by
Ram
43k • written 2.1 years ago by
Gerardo
• 0
1
vote
2
replies
207
views
Flow Cytometry Data Analysis by Seurat
Seurat
updated 27 days ago by
Ram
43k • written 27 days ago by
gdfsnkfns
• 0
1
vote
1
reply
194
views
ComplexHeatmap anno_mark position changes with height of gene expression heatmap
ComplexHeatmap
10 days ago by
CTLong
▴ 110
1
vote
2
replies
268
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 7 days ago by
Ram
43k • written 7 days ago by
aniigodwinn
• 0
1
vote
1
reply
174
views
Help/Direction Needed for Data Analysis of RNA
Sequencing
RNA-seq
DNA-Seq
updated 8 days ago by
dsull
★ 5.8k • written 8 days ago by
niruf
• 0
1
vote
3
replies
252
views
CCA with random effects model
CCA
updated 22 days ago by
dariober
14k • written 23 days ago by
leranwangcs
▴ 120
1
vote
4
replies
386
views
what is the normal range of htseq-count output for homo sapiens RNA-Seq
Transcriptomics
htseq-count
RNA-Seq
NGS
hisat2
updated 11 days ago by
BioinfGuru
★ 1.7k • written 12 days ago by
Morteza
• 0
1
vote
6
replies
1.6k
views
How can Differentially Expressed Genes be found by limma package after removing batch effect by ComBat function in sva package?
limma
sva
batch-effect
R
updated 9 days ago by
Ram
43k • written 3.8 years ago by
amirmehrgou
▴ 10
1
vote
4
replies
2.2k
views
Remove batch effect for prediction of RNA-seq data
RNA-Seq
batch-effect
Random-Forest
updated 7 days ago by
Ram
43k • written 4.7 years ago by
Vlad
▴ 10
1
vote
0
replies
367
views
Differential expression analysis on multiple integrated datasets
microarray
Z-score
limma
differential-gene-expression
meta-analysis
updated 15 days ago by
Ram
43k • written 2.4 years ago by
michael.s
▴ 10
1
vote
2
replies
201
views
In need of help with my RNA velocity trajectory inference pipeline!
RNAvelocity
16 days ago by
phhelou5
• 0
1
vote
2
replies
226
views
permutation test in edgeR
rna-seq
edgeR
updated 2 days ago by
Gordon Smyth
★ 7.0k • written 16 days ago by
Netanel
• 0
1
vote
2
replies
921
views
vg surject for long reads
long-reads
vg
variation-graph
surject
updated 19 days ago by
Ram
43k • written 23 months ago by
ved_vyas
▴ 10
1
vote
7
replies
888
views
GATK Mutect2 Input files reference and features have incompatible contigs: No overlapping contigs found.
hg19
Mutect2
GATK
Variant-Calling
updated 29 days ago by
Ram
43k • written 9 months ago by
Manuel Sokolov Ravasqueira
▴ 100
1
vote
1
reply
156
views
Failed kmer content
kmer
illumina
ngs
updated 1 day ago by
Ram
43k • written 1 day ago by
Kasturi
• 0
1
vote
3
replies
6.1k
views
Error for converting from gene symbol to Entrez IDs
Entrez-ID
org.Dr.eg.db
updated 8 days ago by
Ram
43k • written 5.5 years ago by
modarzi
▴ 170
1
vote
3
replies
2.4k
views
Problem to remove subset of patients with plink
plink
PED
updated 2 days ago by
chrchang523
10k • written 6.1 years ago by
Ginevra
▴ 10
1
vote
4
replies
807
views
I want to calculate if the sample has whole genome duplication event or not?
sequencing
wgs
15 days ago by
Hyper_Odin
▴ 310
1
vote
2
replies
324
views
BAM to CRAM and BAM recover with smaller size
BAM
samtools
CRAM
updated 21 days ago by
jkbonfield
★ 1.2k • written 5 weeks ago by
geocarvalho
▴ 360
1
vote
2
replies
312
views
Extracting information from gff3 file produced by augustus
augustus
gff3
updated 9 days ago by
Istvan Albert
100k • written 10 days ago by
Jiang
• 0
1
vote
4
replies
277
views
Removing batch effect using combat-seq
batch
effect
RNA-Seq
combat-seq
updated 23 days ago by
BioinfGuru
★ 1.7k • written 23 days ago by
Netanel
• 0
1
vote
2
replies
821
views
Replacing default numbers with geneNames in enhancedVolcano
EnhancedVolcano
updated 22 days ago by
Ram
43k • written 2.6 years ago by
Mohan
• 0
1
vote
2
replies
273
views
BWA MEM Alignment mapped small part of the reads!!
bwa
mem
updated 29 days ago by
bioruffo
▴ 40 • written 4 weeks ago by
Bunit
• 0
1
vote
0
replies
149
views
Contradictions in GSEA results
GSEA
Enrichment-analysis
PEA
updated 27 days ago by
Ram
43k • written 27 days ago by
Tolga
▴ 30
1
vote
1
reply
180
views
Do I need to go back and filter my long-reads?
alignment
nanopore
filtering
QC
ONT
updated 9 days ago by
GenoMax
141k • written 9 days ago by
eesiribloom
▴ 80
1
vote
0
replies
671
views
Conditions for valid batch effect correction
r
batch-effect
updated 8 days ago by
Ram
43k • written 5.2 years ago by
Sebastian Hesse
▴ 340
1
vote
1
reply
243
views
RNA seq normalization and gene gene correlation
rna-seq
pearson-correlation
vst
updated 12 days ago by
Ram
43k • written 12 days ago by
Fish
• 0
1
vote
0
replies
1.1k
views
interpretation of trajectory and batch effect
monocle3
batch-effect
trajectory
updated 16 days ago by
Ram
43k • written 3.5 years ago by
tushard1987
▴ 10
1
vote
1
reply
222
views
Retrieve a % coverage for each transcript
RNA-seq
updated 7 days ago by
Ram
43k • written 7 days ago by
jammydodger123456
▴ 40
1
vote
1
reply
2.7k
views
Plotting a PCA Plot from SVASeq results
pca
ruvseq
sva
svaseq
batch-effect
updated 8 days ago by
Ram
43k • written 6.2 years ago by
jjrin
▴ 40
1
vote
0
replies
142
views
Seeking Advice on Gene Ontology Analysis for Bulk RNA-Seq Data Without Control Samples
Gene-ontology
RNA-seq
R
updated 9 days ago by
Ram
43k • written 9 days ago by
Oscar
▴ 10
1
vote
2
replies
263
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq
kallisto
8 days ago by
bioinfo
▴ 150
1
vote
0
replies
184
views
Synthetic lethality and cancer database
interaction
lethal
synthetic
27 days ago by
Shicheng Guo
★ 9.4k
1
vote
0
replies
1.8k
views
Using SVA with RRBS data
sva
batch-effect
RRBS
updated 8 days ago by
Ram
43k • written 7.1 years ago by
mrodrigues.fernanda
▴ 50
1
vote
3
replies
341
views
Ensembl gene id conversion
biomart
ensembl
updated 8 days ago by
ATpoint
82k • written 10 days ago by
naveedhasan2000
• 0
1
vote
0
replies
155
views
DESeq2 comparing timepoints within treatment and account for background control change
RNAseq
DEG
DESeq2
updated 13 days ago by
Ram
43k • written 13 days ago by
ian.will
▴ 30
1
vote
3
replies
275
views
True variants selection
vcf
bcftools
updated 12 days ago by
dthorbur
★ 1.9k • written 13 days ago by
maevalefeuvre
• 0
1
vote
2
replies
283
views
Tumour purity and ploidy estimation
Copy-number
Whole-exome-sequencing
8 days ago by
bp22
▴ 80
1
vote
1
reply
474
views
Manta: What does all this mean
manta
Variant-calling
VEP
updated 22 days ago by
Ram
43k • written 9 months ago by
josh.mannheimer
• 0
0
votes
1
reply
196
views
The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea
22 days ago by
Gordon
• 0
0
votes
1
reply
184
views
samflags to removes mapped concordantly >1 times
samtools
Bowtie2
Metagenome
updated 13 days ago by
jkbonfield
★ 1.2k • written 20 days ago by
pompam_5904
• 0
536 results • Page
3 of 11
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PCA plot (Suggestions Needed)
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