updated 2 days ago by
Ram
43k
•
written 6.8 years ago by
lessismore
★
1.3k
13
votes
22
replies
11k
views
8
votes
10
replies
655
views
6
votes
10
replies
1.7k
views
5
votes
2
replies
1.7k
views
4
votes
13
replies
759
views
updated 2 days ago by
BioinfGuru
★
1.7k
•
written 7 days ago by
matteo.levorato
•
0
4
votes
7
replies
524
views
3
votes
4
replies
3.4k
views
3
votes
2
replies
1.2k
views
updated 1 day ago by
Ram
43k
•
written 4.4 years ago by
baldissera152
▴
10
3
votes
6
replies
2.4k
views
2
votes
0
replies
187
views
2
votes
4
replies
1.4k
views
2
votes
3
replies
3.0k
views
updated 11 hours ago by
Ram
43k
•
written 6.9 years ago by
endikavarela
•
0
2
votes
10
replies
3.4k
views
2
votes
1
reply
235
views
2
votes
3
replies
925
views
updated 3 days ago by
Ram
43k
•
written 4.1 years ago by
svlachavas
▴
790
2
votes
0
replies
1.8k
views
updated 2 days ago by
Ram
43k
•
written 3.4 years ago by
chatterjee.arumoy
▴
50
2
votes
4
replies
266
views
2 days ago by
kirill.zaslavsky
•
0
2
votes
2
replies
242
views
3 days ago by
bioinfo
▴
150
2
votes
6
replies
848
views
2
votes
5
replies
339
views
2
votes
2
replies
625
views
2
votes
7
replies
665
views
updated 6 hours ago by
joe
▴
500
•
written 1 day ago by
quentinperriere
•
0
1
vote
4
replies
373
views
updated 5 days ago by
BioinfGuru
★
1.7k
•
written 6 days ago by
Morteza
•
0
1
vote
1
reply
234
views
1
vote
1
reply
156
views
1
vote
4
replies
2.4k
views
updated 1 day ago by
Ram
43k
•
written 4.8 years ago by
saksis.rihards
▴
10
1
vote
4
replies
2.8k
views
updated 1 day ago by
Ram
43k
•
written 5.1 years ago by
grant.hovhannisyan
★
2.6k
1
vote
4
replies
2.2k
views
1
vote
2
replies
228
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
aniigodwinn
•
0
1
vote
0
replies
128
views
1
vote
8
replies
3.4k
views
1
vote
2
replies
1.9k
views
updated 11 hours ago by
Ram
43k
•
written 6.5 years ago by
Alternative
▴
270
1
vote
3
replies
4.1k
views
1
vote
1
reply
185
views
1
vote
1
reply
1.7k
views
1
vote
3
replies
253
views
updated 6 days ago by
dthorbur
★
1.9k
•
written 7 days ago by
maevalefeuvre
•
0
1
vote
1
reply
2.7k
views
1
vote
2
replies
289
views
updated 3 days ago by
Istvan Albert
100k
•
written 5 days ago by
Jiang
•
0
1
vote
3
replies
6.1k
views
1
vote
0
replies
1.8k
views
updated 2 days ago by
Ram
43k
•
written 7.1 years ago by
mrodrigues.fernanda
▴
50
1
vote
0
replies
662
views
updated 2 days ago by
Ram
43k
•
written 5.1 years ago by
Sebastian Hesse
▴
340
1
vote
1
reply
652
views
updated 2 days ago by
Ram
43k
•
written 4.4 years ago by
s.lima.diogenes
▴
10
1
vote
6
replies
1.6k
views
updated 3 days ago by
Ram
43k
•
written 3.8 years ago by
amirmehrgou
▴
10
1
vote
2
replies
232
views
1
vote
3
replies
307
views
updated 2 days ago by
ATpoint
81k
•
written 4 days ago by
naveedhasan2000
•
0
1
vote
2
replies
257
views
2 days ago by
bp22
▴
60
1
vote
2
replies
802
views
1
vote
2
replies
1.7k
views
1
vote
1
reply
154
views
1
vote
1
reply
186
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
jammydodger123456
▴
40
Recent Locations •
All
Bologna, just now
India, just now
Hong Kong, just now
India, 4 minutes ago
Australia, 7 minutes ago
India, 7 minutes ago
India, 11 minutes ago
Recent Awards •
All
Scholar to
Gordon Smyth
★
7.0k
Popular Question to
yueli7
▴
250
Popular Question to
Chirag Parsania
★
2.0k
Commentator to
GenoMax
141k
Centurion to
jkbonfield
★
1.2k
Recent Replies
Comment: Korean human genome reference file
by
SeoGyun
•
0
Thanks..... But I want to do imputation, so I have to make it as a vcf file, but the site only has a fatsa file....
Comment: miRNAs quantification using mirdeep2 tool
by
Ashok
•
0
thank you for your reply
https://github.com/rajewsky-lab/mirdeep2/blob/master/TUTORIAL.md
i saw this github tutorial for miRNA quantifica…
Comment: Load a full GFF3 into annotation track using arrow (Apollo)
by
cmdcolin
★
3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: Removing duplicates
by
joe
▴
500
I'd try those OP @samuel recommends
My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis
by
swbarnes2
14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do:
bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option.
Get the PDB ID's
$ ./get.sh "Mus musculus" AHR
4M4X
5NJ8
5V0L
8H77
Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that.
EDIT: I've updated that number to 250. I'm hoping you won't need …
Answer: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script:
```bash
organism=$(echo $1 | sed 's/ /%20/g')
gene=$2
curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool
by
GenoMax
141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads?
Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Traffic: 2013 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6