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updated 14 days ago by
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written 7.0 years ago by
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updated 9 days ago by
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written 7.1 years ago by
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written 7.0 years ago by
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Comment: Fasta headers column spilt or selection
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antmantras
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Yeah, I know it can be written with:
grep ">" myfile.fasta | awk '{print $3}' > output.txt
if one is only looking for the names of th…
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If you want multithreaded I/O the command-line is a pretty annoying (since you're running a tool within gridss, not the whole pipeline): yo…
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Have you considered using a SV breakpoint calling tool (using a reference that includes both host and viral sequence), or a viral integrati…
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There isn't anything in your post to suggest that subread is missing FTH1 or it's exons. If these reads match the pseudogene region even sl…
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Thank you for your suggestion;
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Pandas is notoriously slow at reading in large datasets
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Thank you so much! Will try to run the analysis with the file and check it! Thanks again!!
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As long as the file is not empty it should be good.
Comment: Error in converting vcf file to plink format
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____________________________________________
I just tried with plink 1.9 and it worked pretty well!!!! Thank you once again!
Comment: Error in converting vcf file to plink format
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Thank you so much for your reply with clarification. I will try with plink 1.9!
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This error is a consequence of using plink 1.07, which has to load the entire dataset into memory, instead of plink 1.9, which is capable o…
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Thank you so much! I just check my workinf directory with "ls" and I was able to find the file name "20100804.All.panel". Does this means i…
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While you wait on other answers start here: https://string-db.org/
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Correct. This looks like a problem with your local network. I was able to access the link without problems.
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Thank you for your information. I just tried with your command and got the error as Temporary failure in name resolution. Did you mean like…
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