Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this week
all time
today
this week
this month
this year
330 results • Page
2 of 7
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
217
views
Simes method
simes
method
SNP
R
2 days ago by
Eliza
▴ 10
0
votes
2
replies
298
views
Post-Imputation QC Problem
Imputation
1 day ago by
Jesse
• 0
0
votes
1
reply
235
views
Conformational antigens
Immunoinformatics
updated 4 days ago by
Ram
38k • written 4 days ago by
Mohamed
• 0
0
votes
2
replies
312
views
best practice to choose AF threshold based on population number
VCF
AF
allele-frequency
4 days ago by
prasundutta87
▴ 650
2
votes
5
replies
520
views
msigdbr returns the same genesets for mouse as in for human,
msigdbr
updated 11 hours ago by
igor
13k • written 4 days ago by
e.r.zakiev
▴ 30
0
votes
0
replies
178
views
selection of 2 by 2 Chi-square Test
statistics
Chi-square
updated 4 days ago by
Ram
38k • written 4 days ago by
Binghong
▴ 20
0
votes
0
replies
183
views
Check most expressed isoform of mouse gene in specific tissue
FANTOM
gene-expression
MGI
mouse
updated 4 days ago by
Ram
38k • written 4 days ago by
gspirito
▴ 10
1
vote
0
replies
178
views
gseKEGG with streptomyces coelicolor - No gene can be mapped
streptomyces
KEGG
clusterProfiler
4 days ago by
r.evans2
▴ 10
0
votes
0
replies
246
views
Power calculations for the detection of differentially expressed genes in pseudobulk scRNA-seq data
scRNA-seq
pseudobulk
power
RNA-seq
updated 4 days ago by
Ram
38k • written 4 days ago by
Ali
• 0
2
votes
8
replies
474
views
Depth of Coverage in Mitochondrial Genome with Samtools
samtools
depth-of-coverage
Mitochondrial-genome
2 days ago by
Lida
• 0
0
votes
1
reply
206
views
Genes near SNP within certain window frame and distance
bedops
bedtools
updated 4 days ago by
Ram
38k • written 4 days ago by
waqaskhokhar999
▴ 150
0
votes
0
replies
192
views
95% CI for AUC in R
AUC
R
4 days ago by
dhananya
• 0
0
votes
1
reply
242
views
comparison between STARsolo and cellranger
STARsolo
cellranger
updated 4 days ago by
GenoMax
127k • written 4 days ago by
dalibenam64
• 0
0
votes
1
reply
187
views
building model with lectin array data and patient data
lectin
model
updated 4 days ago by
ATpoint
70k • written 5 days ago by
dharmini1998
• 0
1
vote
1
reply
205
views
What's the correct way to map to hg38 with alternative contigs?
NGS
bwa
updated 4 days ago by
ATpoint
70k • written 5 days ago by
Belanov
▴ 10
0
votes
0
replies
192
views
How to find association between a gene-rsid and AD
association
Loci
LD
AD
5 days ago by
rheab1230
▴ 140
0
votes
2
replies
251
views
Finding repeats in dna sequences
OP
5 days ago by
ojaswinipandey
• 0
0
votes
0
replies
186
views
Why DEG analysis of the same region in two different datasets results in different sets of DEGs?
single
integration
cell
DEG
design
analysis
5 days ago by
paria
▴ 70
1
vote
0
replies
150
views
I want to calculate if the sample has whole genome duplication event or not?
sequencing
wgs
5 days ago by
Hyper_Odin
▴ 280
0
votes
0
replies
121
views
Metatranscriptomics: de novo assembly of mRNA per OTU?
MAGs
no
total
novo
metatranscriptomics
assembly
de
MEGAN
rna
5 days ago by
Maria
• 0
0
votes
3
replies
156
views
A problem about saving Rstudio data matrix
data
Rstudio
matrix
updated 5 days ago by
bkleiboeker
▴ 320 • written 5 days ago by
yoser4
▴ 10
0
votes
0
replies
84
views
How can I obtain the significantly different taxa data from this Aldex plot ? (Using R)
taxa
test
Aldex2
of
abundance
Relative
R
5 days ago by
ohtang7
▴ 30
0
votes
0
replies
107
views
GO analysis in R vs website
GO
5 days ago by
Thomas
• 0
0
votes
0
replies
93
views
Observed vs. expected occurences in genomic windows
ngs
statistics
snp
5 days ago by
schmau
▴ 10
0
votes
0
replies
103
views
How generate sample sheet data for Illumina Infinium Global Screening Array *.idat file?
Global
microarray
Illumina
Infinium
Screening
.idat
Array
5 days ago by
Jichen Wen
▴ 30
0
votes
1
reply
173
views
Combining RNAseq datasets
RNAseq
DEseq
NGS
updated 5 days ago by
rpolicastro
11k • written 5 days ago by
torio
• 0
0
votes
2
replies
207
views
Do we need replicates for PSI calculation in SUPPA2?
SUPPA2
splicing
RNA-seq
Alternative
5 days ago by
sreelekha
▴ 10
0
votes
0
replies
171
views
How to export the result contents (analyzed part only) of clr function to the CSV file ? (The microbiota data) in R Aldex2 package
Aldex2
ASV
R
updated 4 days ago by
Ram
38k • written 6 days ago by
ohtang7
▴ 30
0
votes
0
replies
127
views
check if a protein abundance is expected to be low
mass-spectrometry
6 days ago by
Abhishek
• 0
0
votes
0
replies
109
views
Error when trying to send data to DB chado
install
chado
error
6 days ago by
Marcos
▴ 10
0
votes
0
replies
138
views
Why did I get more unique genes than unique transcripts w/ STAR -> featureCounts?
rnaseq
genomics
star
fastq
alignment
5 days ago by
O.rka
▴ 650
0
votes
0
replies
142
views
inquiry related to same SNP for a gene across for two tissues
snp
relation
tissue
genetics
gene
6 days ago by
rheab1230
▴ 140
6
votes
11
replies
682
views
Calculate RPKM
RPKM
1 day ago by
Chris
▴ 70
0
votes
0
replies
116
views
chia-pet tutorial
snp
gene
chia-pet
6 days ago by
rheab1230
▴ 140
0
votes
0
replies
134
views
DESeq2 for time series and control-treated groups
log2foldchange
DESeq2
6 days ago by
t.ru
• 0
2
votes
3
replies
254
views
mRNA Seq
NGS
updated 5 days ago by
Ram
38k • written 6 days ago by
Yaseen
▴ 10
0
votes
0
replies
115
views
Adding MBC/UMI RX tag to read name
umi
6 days ago by
Christian
▴ 20
1
vote
7
replies
243
views
error bbduk
linux
bbduk
java
updated 6 days ago by
lieven.sterck
14k • written 6 days ago by
Kárita
• 0
0
votes
0
replies
101
views
Seeking explanation of the difference between GO term normal vs non-redundant!
GO
RNA-seq
term
analysis
webgestalt
6 days ago by
Soumajit
▴ 30
0
votes
2
replies
195
views
Xenocell - Error in classify reads
Xenocell
PDX
scRNAseq
singularity-container
5 days ago by
c2e09af0
• 0
0
votes
0
replies
140
views
How to detect tumor-specific splicing aberrations
splicing
6 days ago by
iraun
5.8k
1
vote
1
reply
196
views
From where i can download the bed file of hg19 which contaning the corrdinates as well as gene name.
bed
updated 4 days ago by
Ram
38k • written 6 days ago by
Anisha
• 0
0
votes
2
replies
231
views
Databases for cell lines
Genomics
Genetics
updated 5 days ago by
Ram
38k • written 7 days ago by
aranyak111
• 0
0
votes
3
replies
319
views
Alt allele - after bcftools norm
bcftools
GATK
VCF
updated 6 days ago by
iraun
5.8k • written 7 days ago by
kamanovae
▴ 80
0
votes
2
replies
315
views
HTseq no features
bam
GFF
HTseq
updated 6 days ago by
michael.ante
★ 3.8k • written 11 days ago by
cat910064
• 0
0
votes
4
replies
324
views
WGCNA number of modules issue
networks
gene
WGCNA
correlation
5 days ago by
1215045934
▴ 80
2
votes
4
replies
433
views
Trouble with transcripts_id when using how_are_we_stranded_here python package
bash
sequencing
RNA-seq
4 days ago by
ashleymb1116
• 0
2
votes
2
replies
300
views
bcftools annotate -a
bcftools
VCF
updated 4 days ago by
Ram
38k • written 20 days ago by
anasjamshed
▴ 120
1
vote
3
replies
348
views
DESeq2 code to perform DEG analysis
SEseq2
DEG
updated 4 days ago by
Ram
38k • written 22 days ago by
rupali
• 0
0
votes
0
replies
185
views
Comparing 2 groups of bacterial genomes
fasta
pacbio
Bacteria
BLAST
updated 4 days ago by
Ram
38k • written 26 days ago by
Jonathon
• 0
330 results • Page
2 of 7
Recent Votes
Comment: Trying to install Roary with Conda results in error message
Answer: RNA-SEQ
Comment: RNA-SEQ
Comment: RNA-SEQ
Answer: RNA-SEQ
Gene Set Enrichment Analysis
Can I sort my bam files with Picard MergeSamFiles?
Recent Locations •
All
Paris,
just now
Israel,
just now
Thailand,
just now
India,
1 minute ago
Germany,
3 minutes ago
South Korea,
3 minutes ago
Finland,
4 minutes ago
Recent Awards •
All
Popular Question
to
joselu
▴ 110
Popular Question
to
Emy
▴ 40
Voter
to
feiwu00
• 0
Popular Question
to
paigemiller
• 0
Scholar
to
GenoMax
127k
Popular Question
to
shpak.max
▴ 20
Scholar
to
hugo.avila
▴ 490
Recent Replies
Answer: Why parametric linkage analysis on Merlin gives zero "0" LOD score?
by
Regina Phalange
• 0
Hello! Although it's a very old problem, I have encountered the same issue and it was difficult to find relevant answers through search. Fi…
Comment: Can someone help me with searching overlapping values between two files?
by
mxm189
• 0
I tried some stuff but it didnt work. I used ChatGPT, because I'm not good at this. I tried sorting of the two files first # Sort the inp…
Comment: Survival analysis with gene expression
by
krushnach80
★ 1.1k
Hello @kevinblighe I would like to get your help in [this][1] [1]: https://www.biostars.org/p/9558148/
Comment: activity of unloaded/unassembled Tn5
by
callumjcparr
• 0
![enter image description here][1] ![enter image description here][2] ![enter image description here][3] ![enter image description he…
Answer: How to implement this two-stage one-to-many workflow using WDL?
by
Ruben
• 0
> Unfortunately, as far as I can tell, WDL provides no support for iterating over the contents of a directory. (I find this shocking. I con…
Answer: activity of unloaded/unassembled Tn5
by
callumjcparr
• 0
So I hope someone is still interested in this. We have taken to preparing recombinant Tn5 now as it's much cheaper than commercial suppli…
Comment: RNA-SEQ
by
ali
• 0
thanks for your helping
Comment: TSS of protein coding genes
by
ConvolutedGenome
▴ 10
I am quite confused with GENCODE GTF file, So, within the GENCODE GTF file, I noticed that each (protein-coding) gene has multiple "transc…
Comment: Recommendation for (Alternative) Splicing analysis packages for bulk RNA-seq da
by
iraun
5.8k
Hi! I personally use [SplAdder][1], in case you want to add it to your list :). [1]: https://github.com/ratschlab/spladder
Answer: Problem generating a .vcf after upgrade of samtools and bcftools
by
Andy
• 0
Really the only needed, that help worked, thank's
Comment: Active enhancers for mm39
by
seidel
11k
Just curious what you mean by "active" enhancers. Enhancers are active in a given context (e.g. cell type developmental state, etc.), and m…
Comment: Creating loop for read groups using Picard
by
ntsopoul
▴ 20
try absolute paths navigate to the directory with cd and use pwd to get the absolute directory.
Comment: how to create interacting Hi-C peaks
by
rheab1230
▴ 140
Thank you. I will use this package since I am more familiar with R
Comment: how to create interacting Hi-C peaks
by
rheab1230
▴ 140
thank you. i will go through it
Comment: Fastqc report analysis
by
npavliukovec
• 0
Yeah, after trimming and fastqc I will have to generate MultiQC plots and after do mapping with reference genome. As I know, for eukaryotes…
Traffic: 1574 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6