3 days ago by
poecile.pal
▴
50
0
votes
0
replies
118
views
0
votes
0
replies
185
views
1
vote
4
replies
258
views
0
votes
1
reply
184
views
0
votes
1
reply
171
views
0
votes
0
replies
167
views
0
votes
1
reply
193
views
0
votes
0
replies
157
views
1
vote
0
replies
164
views
0
votes
4
replies
337
views
1 day ago by
kcarery
•
0
0
votes
0
replies
163
views
0
votes
4
replies
398
views
3 days ago by
Utpal
•
0
0
votes
0
replies
160
views
2 days ago by
Leite
★
1.2k
0
votes
2
replies
250
views
0
votes
2
replies
222
views
1
vote
3
replies
1.0k
views
0
votes
2
replies
252
views
5 days ago by
ugur
•
0
0
votes
0
replies
141
views
1
vote
0
replies
133
views
5 days ago by
barrypraveen
▴
110
0
votes
0
replies
148
views
2 days ago by
farzaneafzali
▴
70
0
votes
0
replies
129
views
updated 5 days ago by
Pierre Lindenbaum
153k
•
written 5 days ago by
shreshta2396
•
0
0
votes
0
replies
122
views
5 days ago by
parrasevilla.bioinfo
•
0
0
votes
1
reply
218
views
updated 5 days ago by
jv
★
1.0k
•
written 5 days ago by
Omics data mining
▴
210
1
vote
2
replies
271
views
0
votes
2
replies
215
views
6 days ago by
brandnewatthis
•
0
0
votes
0
replies
217
views
0
votes
1
reply
181
views
0
votes
0
replies
132
views
0
votes
0
replies
121
views
2
votes
6
replies
317
views
updated 6 days ago by
Ram
38k
•
written 6 days ago by
abdelmalek.benmeziane
•
0
0
votes
1
reply
140
views
updated 6 days ago by
Mensur Dlakic
★
23k
•
written 6 days ago by
Fathima
•
0
0
votes
1
reply
156
views
0
votes
0
replies
112
views
3
votes
2
replies
224
views
6 days ago by
rene.j.erhardt
▴
20
1
vote
2
replies
226
views
2
votes
4
replies
252
views
0
votes
0
replies
119
views
0
votes
0
replies
130
views
updated 7 days ago by
Ram
38k
•
written 7 days ago by
npavliukovec
•
0
0
votes
0
replies
104
views
2
votes
12
replies
551
views
0
votes
0
replies
105
views
7 days ago by
Lakshmi
▴
10
0
votes
0
replies
102
views
0
votes
0
replies
94
views
0
votes
0
replies
88
views
0
votes
0
replies
97
views
0
votes
0
replies
100
views
0
votes
0
replies
155
views
0
votes
0
replies
92
views
1
vote
1
reply
154
views
Recent Votes
Recent Locations •
All
Vietnam, 1 minute ago
India, 2 minutes ago
India, 2 minutes ago
India, 7 minutes ago
Brazil, 8 minutes ago
35 Phạm Văn Nghị, Cổ Nhuế, Từ Liêm, Hà Nội, 10 minutes ago
India, 16 minutes ago
Recent Awards •
All
Popular Question to
Bogdan
★
1.3k
Popular Question to
pavelasquezv
▴
50
Popular Question to
Anand Rao
▴
550
Scholar to
andres.firrincieli
3.2k
Popular Question to
chaco001
▴
10
Recent Replies
Answer: Any tips in landing a bioinformatic job?
by
Vincent Laufer
★
2.5k
Do you have a public facing github page (or equivalent) that provides examples of bioinformatics workflows you've created?
For myself, if …
Comment: Align miRNA library (small RNA-seq) without trimming
by
Paola
▴
10
Hi Ming
Untrimmed reads have 76bp in average.
Answer: Align miRNA library (small RNA-seq) without trimming
by
Ming Tommy Tang
★
2.9k
bowtie 1 is good for short read < 50bp, how long is your read? bowtie2 is better for reads > 50 bp
Comment: Differences in RNAseq Variant Calling and Allele Specific Expression
by
afei
•
0
Hi!
I'm also confused by this. And the site (https://gatkforums.broadinstitute.org/gatk/categories/gatk-support-forum) is closed. Have you …
Comment: Variant caller reports a homozygous variant genotype, but more reads are associa
by
rebeliscu
▴
50
Indeed, I thought the quality might be a factor. Still, given the information, it seems odd to me that that call was made.
Thanks for you…
Answer: How can I use bcftools mpileup or an alternative to find ALL variants without an
by
cfos4698
▴
730
To generate a VCF file one would normally pipe the input of an `mpileup` command into an actual `call` command. For example:
```
bcftools …
Answer: PTM-aware protein folding / docking
by
Mensur Dlakic
★
23k
Your assumption is correct - AlphaFold pTM has nothing to do with post-translational modifications. See [**here**][1].
Not to discourage…
Answer: Admixture cv error
by
Declan
•
0
I had this issue today and was able to resolve it by changing the random seed Admixture uses by adding `-s time` (which sets the random see…
Answer: Total No of Genes of GENCODE Release 43
by
ahmad
•
0
The following is the correct code
gtf_43<-rtracklayer::import('gencode.v43.primary_assembly.annotation.gtf')
dtgtf_43<-data.frame(gtf_4…
Comment: Total No of Genes of GENCODE Release 43
by
ahmad
•
0
Hello,
thanks for replying, by mistake I paste the wrong code. the following is the corrected
gtf_43<-rtracklayer::import('gencode.v43…
Comment: Kallisto bustools for scRNA-seq
by
dsull
★
4.0k
I have no idea what that is besides a bunch of jumbled sequences. You'll need look up the structure of the reads / library from wherever yo…
Comment: Aberrant splicing in bulk RNAseq
by
dsull
★
4.0k
First thing: kallisto cannot interface with UMI-tools (kallisto doesn't use read headers and therefore you're stuck with "the kallisto way"…
Comment: Using Copy Number Alterations detected in other studies for the same tumor cell
by
lethalfang
▴
90
There is some somatic SV study on these HCC1395: https://doi.org/10.1186/s13059-022-02816-6.
There is also a CNA preprint from years ago b…
Comment: Somatic truth set
by
lethalfang
▴
90
Just in case things are hard to find, for the WGS/WES, these are the data (what the file names mean: https://sites.google.com/view/seqc2/ho…
Comment: How to get subset of a Seurat object based on metadata?
by
jv
★
1.0k
Hmm, not sure why `subset` doesn't match to '0:CD8 T cell' but maybe it's the ":"?
An alternative option is the following:
```
idx <- whi…
Traffic: 1514 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6