Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : today
all time
today
this week
this month
this year
17 results • Page
1 of 1
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
2
views
Calling SE and TE using ROSE
Calling
SE
1 minute ago by
Manhezz
• 0
0
votes
0
replies
17
views
BLAST using both nucleotides and taxonomic local databases
blast
ncbi
taxid
taxonomy
44 minutes ago by
Begonia_pavonina
▴ 150
0
votes
1
reply
28
views
Why gatk VariantAnnotator required bam and coverage files
gatk
VariantAnnotator
updated 1 hour ago by
Pierre Lindenbaum
161k • written 1 hour ago by
QX
• 0
0
votes
0
replies
28
views
Why not use iBAQ for calculating differential abundance of proteins?
protein
maxquant
3 hours ago by
Aspire
▴ 300
0
votes
2
replies
91
views
Highest variable features in single cell data
cell
single
1 hour ago by
Kazo
• 0
0
votes
0
replies
63
views
PCA plot
DESeq2
PCAplot
8 hours ago by
Aaliya
▴ 10
0
votes
0
replies
66
views
Can you give me an example of a small globular protein (PDB) that has disordered alpha-carbons?
protein
pdb
alpha-carbon
11 hours ago by
4fzcgueyp5
• 0
0
votes
1
reply
123
views
Annovar using R package
Annovar
gnomAD
R
updated 13 hours ago by
Pierre Lindenbaum
161k • written 16 hours ago by
DKA
▴ 40
0
votes
5
replies
205
views
Is it possible to get a list of representative genomes from a past RefSeq release?
representative
ncbi
asembly
refseq
updated 21 hours ago by
GenoMax
141k • written 22 hours ago by
Bertalan_Takacs
▴ 90
0
votes
0
replies
94
views
One error problem occurred caused by data type during using GDCprepare to handle BRCA data
TCGA
GDCprepare
updated 17 hours ago by
Ram
43k • written 21 hours ago by
glaciya2018
• 0
0
votes
0
replies
155
views
roary not working with pgap output gff files with fasta sequence but works with prokka's gff outputs
pangenome
PGAP
NCBI
roary
Prokka
22 hours ago by
pramach1
▴ 40
0
votes
1
reply
111
views
GEMMA GWAS how to specify factor or numerical for covariates
covariate
GEMMA
GWAS
updated 20 hours ago by
Sofia
• 0 • written 1 day ago by
mawigoj318
• 0
0
votes
4
replies
195
views
different FeatureCounts output for the same data
fpkm
Counts
Rsubread
rna-seq
3 hours ago by
sehriban.buyukkilic
▴ 10
0
votes
0
replies
85
views
Alternative splicing analysis using SUPPA tool - how to normalise counts?
rna-seq
single-cell
suppa
alternative-splicing
updated 17 hours ago by
Ram
43k • written 1 day ago by
newuser2024
• 0
1
vote
2
replies
159
views
alignment result
RNA-seq
samtools
hisat2
6 hours ago by
ahmad.sajad4541
• 0
0
votes
0
replies
77
views
Is result interpretation of the modelHomotypic function of the DoubletFinder correct?
doublet
DoubletFinder
Seurat
modelHomotypic
updated 17 hours ago by
Ram
43k • written 1 day ago by
Jeyong
• 0
0
votes
2
replies
216
views
How to calculate identity percentage between proteins contained in a FASTA file?
protein
FASTA
alignment
updated 17 hours ago by
Ram
43k • written 1 day ago by
v.berriosfarias
▴ 140
17 results • Page
1 of 1
Recent Votes
Comment: Figures are disappeared from html report of SnpEff
Answer: Figures are disappeared from html report of SnpEff
Comment: How to trim transcripts using information from NCBI contamination screen report
Filtering rRNA contamination (indicated by GC content plots) from RNA-seq data
Filtering rRNA contamination (indicated by GC content plots) from RNA-seq data
A: What is the VEP Impact column?
is oxford nanopore technology data paired or single end sequencing?
Recent Locations •
All
London, UK,
just now
Estonia,
1 minute ago
Austria,
2 minutes ago
Ireland,
3 minutes ago
Belgium,
4 minutes ago
Saudi Arabia,
5 minutes ago
India,
5 minutes ago
Recent Awards •
All
Popular Question
to
Hamtaro
▴ 50
Popular Question
to
Nicolas Rosewick
11k
Popular Question
to
Assa Yeroslaviz
★ 1.8k
Popular Question
to
Keem Uarren Eiryll
• 0
Centurion
to
analyst
▴ 30
Popular Question
to
anasjamshed
▴ 120
Popular Question
to
camillab.
▴ 160
Recent Replies
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas
by
GenoMax
141k
At this point you should email NCBI help desk and ask them this question. If you get an answer then please post it back in this thread.
Comment: Figures are disappeared from html report of SnpEff
by
Pierre Lindenbaum
161k
the javascript in your html is deprecated or your firefox is just tool old.
Comment: Why gatk VariantAnnotator required bam and coverage files
by
Pierre Lindenbaum
161k
> I would like to ask why they may require the bam file for this function? hum.. if you want to add the coverage, where do you think gatk …
Comment: Figures are disappeared from html report of SnpEff
by
analyst
▴ 30
By following above approach I got this ![enter image description here][1] [1]: /media/images/b47490eb-d4c4-4f39-a7b2-f5b7b6b8
Comment: Highest variable features in single cell data
by
Kazo
• 0
I apologize for the confusion. What I meant to say is that, for example, the Trbv17 gene appears among the variable genes. However, when I …
Answer: why renaming Idents in Seurat object doesn't work?
by
Assa Yeroslaviz
★ 1.8k
I manage to find a workwround, but I don't understand what I did wrong here. my solution was to extract the cluster column as vector and…
Answer: Finding orthologs between genome error
by
Adrian Altenhoff
★ 1.1k
Hi, thanks for letting us know. In a recent software update, we introduced a problem with the written splice information in the cached …
Comment: Fetch table from clinvar database according to a list of rsid
by
ashaneev07
▴ 20
so which one should i prefer? i don't need the entire results i need the condition-Germline table only. (for eg:-from, https://www.ncbi.nlm…
Comment: To get p-values for the TPM
by
dsull
★ 5.8k
OK, not sure why your intention is to use RSEM p-values for, but at least tell us the commands you ran then otherwise how are we supposed t…
Comment: Fetch table from clinvar database according to a list of rsid
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: different FeatureCounts output for the same data
by
sehriban.buyukkilic
▴ 10
Sure, I'll inquire about the version of Rsubread. I'll keep you posted if it works :) Thanks
Comment: different FeatureCounts output for the same data
by
sehriban.buyukkilic
▴ 10
Yeah, let me show you my featureCounts result, it looks like this. It's too low. [1]: /media/images/eb8293fe-e6ae-4b02-92e2-0ba2075b
Comment: Adding CB tag to bam file
by
Pierre Lindenbaum
161k
samtools addreplacerg is for read groups. This is not what OP asked.
Comment: Adding CB tag to bam file
by
Maria
• 0
When I try ``` samtools addreplacerg -r "@CB\tID:$cell" -o $cell.bam $LINE``` the CB tag gets add to the header, but the tag in every line …
Answer: Figures are disappeared from html report of SnpEff
by
Pierre Lindenbaum
161k
the remote website providing the javascript or/and the images is down or you're now behind a proxy. Check the firefox console: https://fire…
Traffic: 2646 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6