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what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 9 hours ago by 4.5k • written 11 hours ago by ★ 2.4k
0
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3
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257
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how to find genes that are significantly expressed in brain cortex samples
rna-seq gene-expression
updated 3 hours ago by 43k • written 10 hours ago by ▴ 140
0
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2
replies
327
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QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control SNV QC SNP
15 hours ago by _quantum_girl_ ▴ 10
3
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2
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291
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Free/open source 23andme-like analysis
SNPs genomics NGS VCF
16 hours ago by joe ▴ 510
0
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1
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178
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Could you please assist in identifying this cluster?
single-cell
updated 15 hours ago by 43k • written 16 hours ago by • 0
1
vote
1
reply
328
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Load a full GFF3 into annotation track using arrow (Apollo)
arrow python-apollo Apollo
13 hours ago by renan.igor • 0
0
votes
1
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153
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Downloading the raw microarray data from GEO
.gpr microarray .CEL
updated 13 hours ago by 141k • written 14 hours ago by ▴ 10
0
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0
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88
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scRNA Cluster frequency
CV PCA scRNA Cluster-Frequency
12 hours ago by Nitin • 0
0
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0
replies
78
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agilent microarray gpl data does not have gene symbol column
microarray agilent gpl
updated 11 hours ago by 43k • written 13 hours ago by • 0
0
votes
0
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94
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Using samtools with GCS (google cloud storage) on docker a docker container seems to give "Protocol Not Supported" error
samtools gcs
9 hours ago by abhishekghadge • 0
0
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0
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108
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miRDeep2: How to get the read counts
mirdeep2
20 hours ago by Atul K. • 0
0
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0
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64
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Removing Illumina microarray probes with no expression HumanHT-12v4
microarray HumanHT-12v4 Illumina
updated 2 hours ago by 43k • written 7 hours ago by • 0
0
votes
0
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90
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SNP calling with ANGSD and ngsLD. How many SNPs?
lcwgs ngsTools ANGSD genomics
15 hours ago by DanielEB_fisk ▴ 20
0
votes
0
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107
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Conversion to tree format
PLINK bed Figtree SplitsTree
updated 14 hours ago by 43k • written 18 hours ago by • 0
0
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0
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117
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Lncipedia GTF file error
Proteomics
updated 15 hours ago by 43k • written 23 hours ago by ▴ 10
0
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0
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102
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Copy number variation plot
Copy-number-variation genomics
updated 14 hours ago by 43k • written 15 hours ago by • 0
0
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0
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84
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Chemical structure validation
structure cap validation metabolite
13 hours ago by Rodolfo Adrián • 0
0
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0
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93
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absolute path for symbolic links in Snakefile
Snakemake
updated 13 hours ago by 43k • written 13 hours ago by ▴ 60
18 results • Page 1 of 1
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Answer: MEGA Analysis Issue on High-Performance Computer
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what's the genomic location and name of gene responsible for orange and black patches in calico cats
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Comment: Ciriquant not configuring hisat2 indexed files by Atul K. • 0
Thank you. Decreased the threads to 2 (changed the threads: 2 in the config file; but it was somehow using 4). It did run for sometime but …
Answer: GTF file from Stringtie to R Studio for either Ballgown or DESeq2 by Ram 43k
See this section on how to use tximport to import StringTie output for DESeq2 processing: https://bioconductor.org/packages/devel/bioc/vign…
Comment: how to find genes that are significantly expressed in brain cortex samples by Ram 43k
Can you explain the normalization or give me a link that describes it, please? Comparison across samples will always be caveated as RNA-seq…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
Sorry, I see how harsh I come across. It's not good practice to use multiple versions of R in the same project. I can understand legacy pro…
Answer: MEGA Analysis Issue on High-Performance Computer by Mensur Dlakic ★ 27k
> I have ensured that I am using the latest version of MEGA and that other applications are not consuming excessive resources during the an…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Some of us are still learning and fall foul to knowledge limitation fairly regularly. Luckily we have people to put us in our place.
Answer: Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits by GenoMax 141k
> I know that I should be able to collect protein sequences from the blastp results into a file, but I do not know how to do this. You c…
Comment: how to find genes that are significantly expressed in brain cortex samples by rheab1230 ▴ 140
I got the normalized gene count from gtex portal. they use inverse quantile normalization
Comment: what's the genomic location and name of gene responsible for orange and black pa by Matthias Zepper 4.5k
It is not entirely off, but evidently also not correct. Melanin biosynthesis is a multistep process, that indeed prominently involves the…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
> so a single Rscript could utilise multiple environments and versions How is that sane, let alone "better"? Also, why use `snap` for curl…
Comment: how to find genes that are significantly expressed in brain cortex samples by Ram 43k
Normalized how?
Comment: Duplicate marking, read names, and the SRA by GenoMax 141k
With public data one has to work with what is there. If the information about position is absent then only thing that could be done is to l…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Or better yet. To have an R package that allows access to conda environments via "conda list env" so that environments can be switched with…
Comment: what's the genomic location and name of gene responsible for orange and black pa by GenoMax 141k
If GPT is right then it says that: > The specific gene responsible for the orange and non-orange (black or > gray) fur colors in cats is t…
Comment: what's the genomic location and name of gene responsible for orange and black pa by Jean-Karim Heriche 27k
As far as I know the Orange locus hasn't been mapped to a gene. Maybe this paper will help in narrowing the search: https://www.ncbi.nlm.ni…
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