0
votes
3
replies
13k
views
4
votes
9
replies
13k
views
2
votes
4
replies
12k
views
2
votes
13
replies
12k
views
8 follow
updated 6.2 years ago by
basucsmcri
•
0
•
written 7.2 years ago by
biostarsb
▴
30
0
votes
1
reply
12k
views
41
votes
55
replies
12k
views
6 follow
3
votes
8
replies
12k
views
6 follow
3
votes
2
replies
12k
views
7.1 years ago by
jonessara770
▴
240
7
votes
9
replies
12k
views
updated 6.6 years ago by
Satyajeet Khare
★
1.6k
•
written 6.6 years ago by
SMILE
▴
170
2
votes
13
replies
12k
views
8.3 years ago by
cacampbell
▴
60
8
votes
5
replies
12k
views
6
votes
7
replies
12k
views
7.0 years ago by
abascalfederico
★
1.2k
3
votes
4
replies
12k
views
0
votes
3
replies
12k
views
3
votes
16
replies
11k
views
1
vote
2
replies
11k
views
0
votes
4
replies
11k
views
updated 15 months ago by
Ram
43k
•
written 8.9 years ago by
che.bellaj
•
0
2
votes
3
replies
11k
views
updated 14 months ago by
Ram
43k
•
written 8.9 years ago by
ashishchahl
•
0
4
votes
14
replies
11k
views
3
votes
4
replies
11k
views
4
votes
7
replies
11k
views
10.9 years ago by
jeansimon32
▴
170
2
votes
8
replies
11k
views
12.2 years ago by
Nickengland
▴
130
2
votes
4
replies
11k
views
5
votes
9
replies
11k
views
2
votes
0
replies
11k
views
updated 2.1 years ago by
Ram
43k
•
written 9.3 years ago by
c.v.oflynn
▴
100
6
votes
3
replies
11k
views
updated 3.5 years ago by
joshua.theisen
▴
30
•
written 6.0 years ago by
makwana.kd
▴
50
13
votes
22
replies
11k
views
updated 6.6 years ago by
Biostar
20
•
written 6.8 years ago by
lessismore
★
1.3k
4
votes
11
replies
11k
views
20 months ago by
prasundutta87
▴
660
7
votes
8
replies
11k
views
6.5 years ago by
blur
▴
280
3
votes
6
replies
10k
views
6 follow
updated 23 months ago by
ibomsolomon
•
0
•
written 9.9 years ago by
Tohamy
▴
80
2
votes
2
replies
10k
views
3
votes
1
reply
10k
views
updated 20 months ago by
Ram
43k
•
written 8.6 years ago by
stevenlang123
▴
210
3
votes
2
replies
10k
views
11
votes
10
replies
10k
views
updated 2.3 years ago by
Ram
43k
•
written 9.7 years ago by
trakhtenberg
▴
160
0
votes
0
replies
10k
views
2
votes
8
replies
10k
views
5
votes
2
replies
10k
views
2
votes
1
reply
10k
views
1
vote
2
replies
10k
views
7
votes
9
replies
10k
views
2
votes
8
replies
10k
views
updated 12 months ago by
Ram
43k
•
written 5.9 years ago by
Nicolas Rosewick
10k
1
vote
7
replies
10k
views
0
votes
1
reply
10k
views
updated 3.3 years ago by
dqq102829
•
0
•
written 4.3 years ago by
zhangdengwei
▴
210
2
votes
4
replies
10k
views
3
votes
3
replies
10k
views
5.6 years ago by
tarek.mohamed
▴
360
1
vote
5
replies
10k
views
updated 4.2 years ago by
Karma
▴
310
•
written 10.4 years ago by
newDNASeqer
▴
760
0
votes
0
replies
10k
views
10.3 years ago by
jfertaj
▴
110
3
votes
4
replies
10k
views
updated 6.6 years ago by
Ram
43k
•
written 6.6 years ago by
KVC_bioinfo
▴
590
1
vote
1
reply
10k
views
2
votes
16
replies
10k
views
updated 2.3 years ago by
Ram
43k
•
written 9.8 years ago by
BDK_compbio
▴
140
Recent Votes
Recent Locations •
All
Germany, just now
Portugal, just now
France, just now
Indonesia, 2 minutes ago
Germany, 2 minutes ago
Belgium, 3 minutes ago
South Korea, 4 minutes ago
Recent Awards •
All
Popular Question to
predeus
★
1.9k
Teacher to
Pierre Lindenbaum
161k
Popular Question to
Damianos P. Melidis
▴
40
Popular Question to
kwanghoon
▴
20
Scholar to
b.contreras.moreira
▴
150
Popular Question to
pablo
▴
300
Recent Replies
Answer: Bwa sampe - BGI
by
Pierre Lindenbaum
161k
bwa sampe produces unsorted SAM , not BAM.
converting SAM to BAM will reduce the size
sorting the BAM will reduce the size (you can …
Comment: Where to find the homopolymer regions bed file for Hg002 genome?
by
Bikram Kumar
•
0
Hi! Should I delete the stack exchange post? I didn't know that cross posting is bad.
[https://meta.stackoverflow.com/a/425789/5140632][1]
…
Answer: Visualization of PROKKA Annotation Result?
by
colindaven
6.3k
You need a genome browser and you can probably use GBK or gff3 format.
Here are some suggestions - I like JBrowse best, Artemis in its …
Comment: Where to find the homopolymer regions bed file for Hg002 genome?
by
Pierre Lindenbaum
161k
cross-posted https://bioinformatics.stackexchange.com/questions/22401
Comment: Tumour purity and ploidy estimation
by
bp22
▴
60
Hi Llyod98,
This issue is still unresolved and I have not been able to find a tool or solution for purity and ploidy estimation when ther…
Comment: Ensembl gene id conversion
by
ATpoint
81k
Can you add some examples. It is hard to debug textual descriptions.
Answer: Which experiments generate Position Frequency Matrix?
by
ATpoint
81k
Yes, ChIP-seq or similar methods that assay the DNA binding of a protein. But for a reliable matrix you don't need one or two but many data…
Comment: Statistical Advice Needed for RNAseq Data Analysis
by
ATpoint
81k
> ensuring it's not merely a product of random chance
If your approach of getting DEGs is a proper and sound one (e.g. DESeq2 or limma) th…
Comment: Can I compare kallisto counts from samples with different amount of reads?
by
ATpoint
81k
Unequal numbers of reads are normal, that is why normalization is needed. If you want to do simple analysis such as number of detected gene…
Comment: Error in edgeR/Deseq2 Analysis
by
ATpoint
81k
Please ask at https://help.galaxyproject.org/ which is the Galaxy help forum.
Comment: RNAseq 1 control 2 different treatment
by
matteo.levorato
•
0
yes, this is what I did. However, since my treatments are very similar each other, when I check upregulated genes in one treatment, they ar…
Comment: I am new to single cell analysis. Can RNA velocity (spliced/unspliced) be calcul
by
Spring
•
0
Thank you for the kind guidance!
Answer: I am new to single cell analysis. Can RNA velocity (spliced/unspliced) be calcul
by
ATpoint
81k
No, you either have the spliced and unspliced counts available that you need, or you need the fastq files to generate them. Before you dive…
Comment: Convert GVF to VCF
by
george-hall-ucl
•
0
This has moved - it is now at: [https://github.com/Ensembl/ensembl-variation/blob/main/scripts/misc/release/gvf2vcf.pl][1].
[1]: https:…
Traffic: 2321 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6