Limit : this year
all time today this week this month this year
1,000 results • Page 2 of 20
Sort: Votes
Rank Views Votes Replies
7
votes
7
replies
958
views
GSEA analysis
Hi
updated 11 months ago by ▴ 10 • written 11 months ago by ▴ 10
7
votes
4
replies
1.3k
views
microarray gene datasets
gene
updated 6 weeks ago by 38k • written 7.9 years ago by ▴ 60
7
votes
4
replies
1.1k
views
Error: missing values and NaN's not allowed if 'na.rm' is FALSE
Genome Software
8 months ago by sunnykevin97 ▴ 970
7
votes
10
replies
1.1k
views
col as names [solved]
R
updated 5 days ago by 38k • written 4.0 years ago by ▴ 90
7
votes
5
replies
3.6k
views
Trinity de novo transcript assembly too many transcripts
RNA-Seq Assembly
updated 7 months ago by 38k • written 7.8 years ago by ▴ 790
7
votes
2
replies
3.1k
views
Counting reads for gene transcripts with overlapping loci
RNA-Seq gene R
updated 11 weeks ago by 38k • written 7.8 years ago by ▴ 70
7
votes
8
replies
2.4k
views
Discrepency between number of reads tophat
RNA-Seq tophat software-error
updated 5 months ago by 38k • written 7.6 years ago by ▴ 380
7
votes
4
replies
1.1k
views
Are there mm39/GRCm39 blacklist regions?
blacklist
10 months ago by Ian 5.9k
7
votes
13
replies
3.6k
views
DESeq2: can I correct for relatedness when using data from multiplex families?
DESeq2 RNA-Seq Multiplex-families
updated 11 months ago by 38k • written 8.1 years ago by ▴ 580
7
votes
5
replies
2.2k
views
using machine learning regards to ribo-seq data sets
gene-regulatory-network ribo-seq machine-learning
updated 5 months ago by 38k • written 7.6 years ago by ★ 4.1k
7
votes
15
replies
4.7k
views
6 follow
blastn error - NCBI C++ Exception
assembly blast alignment
updated 11 months ago by 14k • written 24 months ago by ▴ 970
7
votes
8
replies
2.9k
views
DEseq2 design matrix with 3 factors
rna-seq deseq2 Forum
updated 9 months ago by ★ 1.1k • written 2.8 years ago by ▴ 50
7
votes
10
replies
1.2k
views
Ubuntu 20.04 Crash
Ubuntu
updated 6 weeks ago by 38k • written 14 months ago by • 0
7
votes
4
replies
1.7k
views
useful and freely available softwares for Bioinformatics
software
updated 5 days ago by 38k • written 8.0 years ago by ▴ 920
7
votes
4
replies
2.1k
views
RSEM BAM outputs, which one to use for RSeQC?
RSEM STAR RSeQC BAM
11 months ago by Freek ▴ 60
7
votes
7
replies
1.2k
views
LRT test with DESeq2 and how to interpret the results
significant LRT DESeq2 genes RNA-Seq
updated 8 months ago by ★ 1.1k • written 10 months ago by ▴ 20
7
votes
6
replies
3.8k
views
Low percentage of reads in Tophat, Is the any setting to improve?
Tophat
updated 11 months ago by 38k • written 8.2 years ago by ▴ 90
6
votes
6
replies
3.1k
views
Bowtie2 classification of discordantly mapped pairs
discordant-pairs bowtie2 alignment
updated 6 months ago by 38k • written 7.5 years ago by ▴ 30
6
votes
4
replies
328
views
Equivalent to SeqMan alignment tool
SeqMan alignments
6 weeks ago by A_heath ▴ 120
6
votes
6
replies
3.5k
views
Already Working In The Field Of Bioinformatics With A Bachelors, Is A Masters Degree Worth The Time?
masters career
updated 22 days ago by 38k • written 9.5 years ago by ▴ 30
6
votes
2
replies
2.2k
views
Which is the best smoothing technique for replacing zeros from data?
Smoothing
updated 11 weeks ago by 38k • written 7.8 years ago by ★ 4.2k
6
votes
7
replies
5.8k
views
best alignment tool for Ion Torrent data
chloroplast genome iontorrent
updated 7 months ago by 38k • written 7.3 years ago by ★ 2.3k
6
votes
1
reply
1.9k
views
gene expression in bioinformatics
gene-expression
updated 5 months ago by 38k • written 7.6 years ago by • 0
6
votes
2
replies
1.7k
views
Periodicity in SNP calling quality - is this normal?
RNA-Seq VCF GATK SNP
updated 6 months ago by 38k • written 7.5 years ago by 13k
6
votes
3
replies
2.9k
views
Homology ratio comparison between different species
Homology evolutionary-distance
updated 9 months ago by 38k • written 8.0 years ago by ▴ 20
6
votes
9
replies
4.7k
views
Best Possible set of Python interview questions for Bioinformatics, that a recruiter can ask?
python
updated 2 days ago by 38k • written 7.9 years ago by ▴ 10
6
votes
7
replies
4.1k
views
8 follow
desktop bioinformatics platform specs
hardware desktop
updated 3 months ago by 38k • written 7.8 years ago by ▴ 610
6
votes
4
replies
374
views
Tools for strand direction detection RNA-Seq
Rna-seq strandedness
updated 4 months ago by 5.9k • written 4 months ago by ▴ 40
6
votes
2
replies
4.2k
views
Adding header to VCF and combine VCF
vcf
updated 8 months ago by 38k • written 7.4 years ago by ▴ 40
6
votes
5
replies
1.6k
views
rna seq bowtie couldn't find index files
tophat Bowtie RNA-Seq
updated 11 months ago by 38k • written 6.3 years ago by ▴ 60
6
votes
3
replies
443
views
Seeking a platform like R language for NGS data manipulation
NGS R data analysis
10 months ago by field654 ▴ 30
6
votes
3
replies
1.7k
views
PLINK results interpretation
SNP software-error
updated 5 months ago by 38k • written 7.7 years ago by ▴ 40
6
votes
7
replies
2.2k
views
Standardizing the language of lab protocols [Current status]
protocols automation
updated 6 months ago by 38k • written 7.5 years ago by ▴ 20
6
votes
4
replies
633
views
Can someone could recommend some article (code and files included) related to alcoholic disease on any grounds?
alcoholic tumor
updated 11 months ago by ★ 23k • written 11 months ago by • 0
6
votes
5
replies
3.3k
views
Mirna Target Prediction
mirna target utr
updated 10 months ago by 38k • written 10.9 years ago by ▴ 170
6
votes
6
replies
3.0k
views
What does it mean for a snp to be enriched?
next-gen R SNP genome
updated 8 months ago by 38k • written 7.1 years ago by ▴ 40
6
votes
6
replies
1.2k
views
paired read or not paired read
RNA-Seq
updated 3 months ago by 38k • written 7.9 years ago by ★ 4.1k
6
votes
5
replies
1.7k
views
the gene_id column is different for each sample when counting fpkm in galaxy cufflinks
RNA-Seq galaxy cufflinks fpkm
updated 8 months ago by 38k • written 7.3 years ago by ★ 4.1k
6
votes
11
replies
700
views
Calculate RPKM
RPKM
2 days ago by Chris ▴ 70
6
votes
12
replies
1.1k
views
Good tutorials/textbooks/articles to introduce biomarker discovery to a biologist?
r biomarker
updated 5 days ago by 38k • written 4.2 years ago by ▴ 290
6
votes
9
replies
651
views
Error when runing Bowtie2: (ERR): bowtie2-align exited with value 1
error BAM Bowtie
updated 7 weeks ago by 127k • written 8 weeks ago by ▴ 40
6
votes
3
replies
3.1k
views
Comment On The Introduction Of A Bioinformatics Paper
publication bayesian-model
updated 16 days ago by 38k • written 9.0 years ago by ▴ 210
6
votes
15
replies
943
views
The Best Cloud Solution For Genomics
cloud data-sharing genomics workflow
updated 8 months ago by 38k • written 9 months ago by ▴ 50
6
votes
13
replies
5.9k
views
DESeq2 and edgeR - no agreement between results
RNA-Seq edgeR DESeq2
updated 7 months ago by 38k • written 7.3 years ago by ▴ 60
6
votes
12
replies
1.2k
views
VCF files 101 - for people from non Bioinformatics Background
vcf sequencing genome variant-calling
updated 9 days ago by 38k • written 2.6 years ago by ▴ 20
6
votes
4
replies
2.4k
views
Trouble renaming output files after running PHYLIP programs from a BASH script
PHYLIP sequence software-error
updated 7 months ago by 38k • written 7.2 years ago by ▴ 880
6
votes
3
replies
6.6k
views
How to set a threshold for coefficient of variation in RNA-seq?
dispersion statistics single-cell RNA-Seq variance
updated 11 months ago by 38k • written 8.2 years ago by ▴ 250
6
votes
6
replies
4.5k
views
MSD calculations vs time
MDsimulation python computational-biology
updated 3 months ago by 38k • written 7.7 years ago by ▴ 30
6
votes
9
replies
974
views
for paired-end unmapped reads after star mapping
STAR-mapping Trinity assembly unmapped-reads
updated 6 months ago by 127k • written 6 months ago by • 0
6
votes
10
replies
813
views
Understanding bam tracks
RNA sequencing bam
updated 6 months ago by 153k • written 6 months ago by ▴ 30
1,000 results • Page 2 of 20
Recent Votes
Comment: how to get to a VCF from bam files
Answer: Informations for gene summary are missing in eutils api of NCBI?
Answer: How to derive conditional maximum likelihood of the sum of independent negative
Answer: How to derive conditional maximum likelihood of the sum of independent negative
Comment: TSV with multi-allelic sites to VCF
Comment: How to find promoter sequence of a gene?
Comment: What means this Error when running a script in python??
Recent Locations • All
Germany, just now
United States, just now
Europe, just now
Philadelphia, PA, USA, 1 minute ago
ETH Zurich, 2 minutes ago
Austria, 3 minutes ago
Algeria, 3 minutes ago
Recent Awards • All
Popular Question to abdelmalek.benmeziane • 0
Teacher to MirianT_NCBI ▴ 440
Popular Question to antonioggsousa 2.8k
Teacher to Harshil ▴ 50
Scholar to Ben_Ensembl ★ 2.2k
Commentator to ATpoint 70k
Popular Question to jpuntomarcos ▴ 40
Recent Replies
Comment: bioinformatics problems solved by graphs data structure by abdelmalek.benmeziane • 0
Je n'ai pas compris
Comment: bioinformatics problems solved by graphs data structure by Pierre Lindenbaum 153k
de-novo assembly ?
Comment: TSS of protein coding genes by Ram 38k
This is uncomfortable territory for me - I'm a computer guy mostly. I think it's safe to say that each transcript has a TSS and the consens…
Answer: Reduce poly-N regions longer than 200bp back to 200bp in a reference genome FAST by Pierre Lindenbaum 153k
eg for chr22, using sed ,j replace 1000 N with a few N : samtools faidx ref.fasta "chr22" |\ awk '/^>/ {printf("%s%s\t",(N>0?…
Comment: how to get to a VCF from bam files by Ram 38k
I agree with GenoMax - you were using array jobs and now you've taken 2 steps backward - a series of jobs submitted using a shell loop is t…
Answer: PCA in gene expression by i.sudbery 16k
No, you should definitely not remove samples from a PCA on the basis that they are not separable between conditions. To do so would artific…
Comment: PCA in gene expression by i.sudbery 16k
Can you upload a picture of the PCA biplot for the benefit of those that have not seen it.
Comment: What means this Error when running a script in python?? by Antonia • 0
Thank you Pierre! It wasn't clear for me at all lol Trully thank you
Answer: How to find promoter sequence of a gene? by sunyeping ▴ 40
Thank you all for the help! To do the ChIP-seq, how many cells are needed? I am working on antigen-specific T cells in tissues, usually,…
Comment: What means this Error when running a script in python?? by Pierre Lindenbaum 153k
in "configs/config_main.yaml", line 29, column 1 could not find expected ':' the message is quite clear to me : There is missing …
Answer: How to derive conditional maximum likelihood of the sum of independent negative by Dan ▴ 90
I try to answer this question. Based on the Conditional Likelihood defined in https://rss.onlinelibrary.wiley.com/doi/epdf/10.1111/j.2517-6…
Answer: Informations for gene summary are missing in eutils api of NCBI? by MirianT_NCBI ▴ 440
Hi, You can use [NCBI Datasets][1] to retrieve gene information in JSON format. Using the gene id you used as an example, you can do thi…
Comment: How to find promoter sequence of a gene? by Trivas ▴ 690
You can use the UCSC genome browser to get the the sequence of X bases upstream of a gene, then use tools in MEME-suite/JASPAR to look for …
Comment: How to find promoter sequence of a gene? by sunyeping ▴ 40
Hello Jeo, We found that Jun/fos are highly expressed in RNAseq. But to map reads mapping to regions upstream of genes, do you mean ATAC…
Comment: significant sequence identity? by xuechun • 0
Is there have any papers to support these? Will you share some reporters?
Traffic: 2966 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6