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You will have to explain 10x10 MSA (I am not familiar with that term)? You don't have the aligned data in a standard MSA alignment format (…
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Actually my bedtools v2.27.1 returns a 3 column bed file with -wa -wb
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Thanks, but what do you mean? I do not have access to the pre-aligned fastas, only the 10x10 MSAs. What I would like to do is just dealig…
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Assuming a three-column BED file you could do this, with an awk command as `-wa -wb` will make a 6-column BED file after the intersect:
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Using the top level assembly should be fine.
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ah ok. I did not know you could do -wa -wb. Thanks
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