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1,000 results • Page
3 of 20
Sort: Votes
Rank
Views
Votes
Replies
4
votes
3
replies
885
views
Testing overlap significance of three gene sets using the hypergeometric distribution
Hypergeometric-distribution
gene-sets
11 months ago by
Pac314
▴ 10
4
votes
1
reply
530
views
How to Load a Molecular Signature Database into clusterProfiler gseGO?
ClusterProfiler
RNA-seq
GSEA
updated 8 months ago by
Nitin Narwade
★ 1.6k • written 8 months ago by
Manuel Sokolov Ravasqueira
▴ 100
4
votes
1
reply
581
views
How to interpret Clustree results?
scRNA
clustering
clustree
updated 7 months ago by
LChart
3.9k • written 7 months ago by
leranwangcs
▴ 120
4
votes
14
replies
1.1k
views
remove white space in fastq file
fastq
updated 3 months ago by
GenoMax
140k • written 3 months ago by
gkarere
• 0
4
votes
4
replies
751
views
Segmentation fault Biopython pairwise alignment
biopython
alignment
updated 10 months ago by
Joe
21k • written 10 months ago by
antoine.fauchois92
▴ 20
4
votes
4
replies
574
views
Request for a linkage analysis tutorial
linkage
updated 7 months ago by
GenoMax
140k • written 7 months ago by
German.M.Demidov
★ 2.9k
4
votes
9
replies
918
views
bcl2fastq troubleshooting all reads dumped to "Undetermined"
demultiplex
illumina
sequencing
updated 3 months ago by
GenoMax
140k • written 3 months ago by
MaxF
▴ 120
4
votes
2
replies
573
views
Visualization package for Maf Files using Python
Python
maftools
Visualization
MAF
updated 5 months ago by
Mark
★ 1.5k • written 5 months ago by
Manuel Sokolov Ravasqueira
▴ 100
4
votes
7
replies
2.1k
views
About normalization of the datasets from Harmonized TCGA data
protein
transcript
normalisation
updated 7 weeks ago by
Ram
43k • written 20 months ago by
qiz218591
▴ 10
4
votes
3
replies
452
views
Parsing columns with awk
awk
updated 5 months ago by
Ram
43k • written 5 months ago by
pablo
▴ 300
4
votes
3
replies
543
views
Identifying enhancers that regulate certain genes
enhancers
updated 8 months ago by
rfran010
▴ 900 • written 8 months ago by
Rozita
▴ 40
4
votes
6
replies
890
views
How to pass from DNA to AA fasta
genetics
updated 10 months ago by
Buffo
★ 2.3k • written 10 months ago by
Anderson Stiward
• 0
4
votes
6
replies
291
views
Protein loops
protein
Loop
14 days ago by
Curious
▴ 10
4
votes
6
replies
2.4k
views
Convert Nanopore Fast5 files to Fasta format
fast5
fasta
Nanopore
10 months ago by
Sowmya Pulapet
▴ 70
4
votes
6
replies
924
views
Open-Source software. Good or bad for the market?
genomic-analysis
software
updated 10 months ago by
Ram
43k • written 6.1 years ago by
Bioinformatician90
• 0
4
votes
8
replies
562
views
GCP Snakemake
snakemake
GCP
updated 9 weeks ago by
Ram
43k • written 9 weeks ago by
Fadwa
▴ 10
4
votes
2
replies
2.1k
views
Bfast Match Paired End Reads - Reports Half Total Number Of Reads
paired-end
alignment
next-gen
updated 9 months ago by
Ram
43k • written 11.2 years ago by
Kenneth Daily
▴ 50
4
votes
6
replies
1.5k
views
Determining inhouse cut offs
coverage
updated 11 months ago by
Ram
43k • written 7.7 years ago by
skbrimer
▴ 730
4
votes
3
replies
708
views
BBduk log and stats appear to be inconsistent
bbduk
bbmap
updated 11 months ago by
GenoMax
140k • written 11 months ago by
Dave Carlson
★ 1.7k
4
votes
7
replies
758
views
SNP IDs
SNP
4 months ago by
kl
▴ 10
4
votes
4
replies
3.2k
views
Unable to install Autogrid4
autogrid
software-error
autogrid4
updated 10 months ago by
Ram
43k • written 3.1 years ago by
roybatty269
• 0
4
votes
8
replies
1.1k
views
Error executing nf-core/metaboigniter pipeline
nf-core
metaboigniter
nextflow
updated 7 months ago by
Phil Ewels
★ 1.4k • written 7 months ago by
eesha28112001
• 0
4
votes
5
replies
1.2k
views
tranfering sam file easy and fast way
SAM
RNA-seq
hisat2
updated 7 months ago by
Ram
43k • written 2.2 years ago by
iamsmor
• 0
4
votes
2
replies
521
views
Can I still remove ambient RNA if I do not have raw barcode-gene matrix?
SoupX
5 months ago by
malonzm1
▴ 20
4
votes
6
replies
2.3k
views
Why weblogo of biopython doesn't work?
Biopython
Weblogo
updated 10 months ago by
minakshiboruahassam
• 0 • written 19 months ago by
Plus
▴ 20
4
votes
3
replies
693
views
Why is there a big difference between the outputs of `geneBody_coverage` of `RSeQC` when using different bed files?
RSeQC
10 months ago by
Dan
▴ 180
4
votes
3
replies
278
views
Getting less DE genes when incorporating all samples
RNA-seq
differential-expression
deseq2
updated 6 weeks ago by
jv
★ 1.7k • written 6 weeks ago by
shome
▴ 10
4
votes
5
replies
1.3k
views
Distributed / parallel computing in bioinformatics
distributed-computing
updated 10 months ago by
Ram
43k • written 6.8 years ago by
CY
▴ 750
4
votes
3
replies
961
views
What is the difference between vst and rlog to perform PCA ?
rlog
PCA
vsd
updated 10 months ago by
ATpoint
81k • written 10 months ago by
Amr
▴ 160
4
votes
6
replies
1000
views
Python script to automatically read in, name output files & parse R1 & R2 fastq.gz files when given an input directory with raw data files
python
fastq
8 months ago by
eorr
▴ 30
4
votes
3
replies
708
views
Creating custom GTF file for use with Cellranger with barcode sequences
Cellranger
6 months ago by
stefano.iantorno
▴ 70
4
votes
3
replies
353
views
Single cell analysis of Cancer
cancer
single-cell
RNA-seq
updated 6 weeks ago by
GenoMax
140k • written 6 weeks ago by
moustafa_abohawya
▴ 20
4
votes
7
replies
880
views
Statistical test to compare data across timepoints
Statistics
updated 5 months ago by
Matthias Zepper
4.5k • written 5 months ago by
Sean
▴ 20
4
votes
16
replies
889
views
hisat2 location does not exist
hisat2
updated 4 weeks ago by
Ram
43k • written 5 weeks ago by
Eric
• 0
4
votes
5
replies
989
views
VEP run with --af_gnomadg refuses to provide allele frequencies for extremely rare variants
vep
gnomad
updated 7 months ago by
Louisse_Ensembl
▴ 60 • written 7 months ago by
Jeremy Leipzig
22k
4
votes
7
replies
726
views
Alternative for grep in a for loop
linux
updated 5 months ago by
Ram
43k • written 5 months ago by
Prangan
▴ 20
4
votes
2
replies
436
views
KEGG DATABASE
DATABASE
KEGG
updated 3 months ago by
jv
★ 1.7k • written 3 months ago by
Sijjil
• 0
4
votes
5
replies
738
views
Does adding reads cause batch effects?
kallisto
RNAseq
9 months ago by
bioinfo
▴ 150
4
votes
6
replies
579
views
Unexpected separation of RNA-seq samples on PCA plot
depletion
PCA
rRNA
plot
RNA-seq
4 months ago by
Tihana
▴ 10
4
votes
8
replies
1.7k
views
Error while running nf-core/rnaseq pipeline
nf-core
RNA-seq
10 months ago by
eesha28112001
• 0
4
votes
6
replies
990
views
Pre-processing for single cell RNAseq: Hard thresholds, data (cluster)-driven or both?
scRNA-seq
updated 5 months ago by
yl759
▴ 120 • written 6 months ago by
psm
▴ 130
4
votes
6
replies
779
views
bwa mem hangs after a few thousand reads
bwa-mem
alignment
bwa
calling
variant
3 months ago by
cee28
▴ 30
4
votes
5
replies
2.3k
views
Merge CNVnator output of multiple samples
CNV
WGS
updated 9 months ago by
Ram
43k • written 6.6 years ago by
zhang248
▴ 40
4
votes
9
replies
2.5k
views
Blast+ remote database names
blast
remote
databases
Blastplus
updated 8 months ago by
GenoMax
140k • written 2.2 years ago by
Komalharini
• 0
4
votes
4
replies
612
views
Feedback on mouse brain scRNA-seq quality control
mouse
brain
singe-cell
scRNAseq
quality-control
7 months ago by
nshenoy
▴ 50
4
votes
5
replies
2.0k
views
Whole blood single cell RNA-seq dataset?
RNA-Seq
scRNA-Seq
whole blood
single cell
11 months ago by
predeus
★ 1.9k
4
votes
16
replies
1.6k
views
How to subset large BAM files specifically/ extract specific subsets?
bamtools
RNAseq
samtools
BAM
updated 5 weeks ago by
Ram
43k • written 6 months ago by
ella
• 0
4
votes
5
replies
344
views
Filter out miRNA from ncRNA dataset
bowtie
bowtie2
miRNA
filtering
ncRNA
updated 5 weeks ago by
ATpoint
81k • written 5 weeks ago by
binaryCode
▴ 10
4
votes
11
replies
1.7k
views
PCA WITH PLINK
PLINK
updated 7 months ago by
Kevin Blighe
87k • written 7 months ago by
Michelle Guerra
• 0
4
votes
3
replies
640
views
How to interpret output of PLINK association test (--assoc)
assoc
updated 7 months ago by
zx8754
11k • written 7 months ago by
karthivalarmathi99
▴ 10
1,000 results • Page
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