updated 7 days ago by
dthorbur
★
1.9k
•
written 8 days ago by
maevalefeuvre
•
0
1
vote
3
replies
257
views
0
votes
1
reply
150
views
0
votes
0
replies
97
views
8 days ago by
JirMan
▴
20
1
vote
1
reply
165
views
0
votes
0
replies
389
views
0
votes
0
replies
99
views
8 days ago by
AshleeThomson
▴
70
0
votes
0
replies
102
views
updated 8 days ago by
Ram
43k
•
written 8 days ago by
Lissa Cruz Saavedra
•
0
0
votes
1
reply
172
views
updated 8 days ago by
Pierre Lindenbaum
161k
•
written 8 days ago by
Saran
▴
50
0
votes
2
replies
257
views
0
votes
0
replies
154
views
updated 8 days ago by
Ram
43k
•
written 8 days ago by
ramin.k2013
•
0
0
votes
1
reply
153
views
updated 9 days ago by
Pierre Lindenbaum
161k
•
written 9 days ago by
sainavyav22
•
0
0
votes
9
replies
551
views
0
votes
0
replies
86
views
0
votes
2
replies
176
views
0
votes
1
reply
136
views
1
vote
2
replies
204
views
2
votes
4
replies
376
views
updated 9 days ago by
GenoMax
141k
•
written 10 days ago by
pl.terzian
•
0
0
votes
0
replies
109
views
0
votes
0
replies
93
views
0
votes
2
replies
211
views
7 days ago by
marongiu.luigi
▴
710
0
votes
8
replies
5.3k
views
8 follow
0
votes
0
replies
96
views
1
vote
4
replies
786
views
2
votes
4
replies
273
views
9 days ago by
synat.keam
▴
100
0
votes
0
replies
92
views
9 days ago by
Roy
▴
10
0
votes
0
replies
182
views
0
votes
5
replies
374
views
2
votes
2
replies
222
views
9 days ago by
javanokendo
▴
60
0
votes
0
replies
98
views
10 days ago by
_quantum_girl_
▴
10
0
votes
2
replies
228
views
0
votes
0
replies
97
views
0
votes
4
replies
257
views
9 days ago by
njornet
▴
20
0
votes
0
replies
114
views
10 days ago by
klervi-lugue
•
0
0
votes
2
replies
209
views
0
votes
3
replies
257
views
0
votes
1
reply
151
views
0
votes
4
replies
320
views
0
votes
0
replies
230
views
0
votes
0
replies
136
views
0
votes
0
replies
112
views
updated 10 days ago by
Ram
43k
•
written 10 days ago by
Shaimaa Gamal
▴
10
0
votes
0
replies
115
views
0
votes
0
replies
128
views
0
votes
0
replies
125
views
2
votes
2
replies
245
views
3 days ago by
bioinfo
▴
150
0
votes
5
replies
487
views
0
votes
1
reply
195
views
2
votes
6
replies
378
views
11 days ago by
jkim
▴
170
0
votes
0
replies
109
views
0
votes
0
replies
104
views
1
vote
1
reply
447
views
updated 11 days ago by
chrchang523
10k
•
written 11 days ago by
dsbusiness135
▴
10
Recent Votes
Recent Locations •
All
United States, 2 minutes ago
Mexico, 3 minutes ago
Iran, 4 minutes ago
Estonia, 4 minutes ago
Stony Brook University, NY, 4 minutes ago
EMBL Heidelberg, Germany, 6 minutes ago
USA, 8 minutes ago
Recent Awards •
All
Popular Question to
Rodolfo Adrián
•
0
Scholar to
damian.szk
▴
70
Popular Question to
alphaflylizard
•
0
Popular Question to
Shicheng Guo
★
9.4k
Popular Question to
DanielEB_fisk
▴
20
Recent Replies
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★
1.7k
Certainly true. Switching versions is way simpler that way, at the cost of the familiarity of the Rstudio IDE - especially if the code is w…
Comment: Duplicate marking, read names, and the SRA
by
GenoMax
141k
> fastq-dump is deprecated
Curios if there a reference for this? `fasterq-dump` seems to allow for parallel streams but `fastq-dump` is st…
Comment: Duplicate marking, read names, and the SRA
by
Luka
•
0
>In many cases those remain recoverable using the -F option when you dump the data (cloud download not required)
The -F option (or any equ…
Answer: Duplicate marking, read names, and the SRA
by
GenoMax
141k
To be specific, not every dataset in SRA loses the original identifiers. In many cases those remain recoverable using the `-F` option when …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
To use different versions of R and bioconductor, you don't really need RStudio. One can simply create new conda environments with the requi…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★
1.7k
Done. Thank you.
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
by
GenoMax
141k
Perhaps add the word linux/ubuntu to the title? You have noted that the instructions are for Ubuntu in text.
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
by
BioinfGuru
★
1.7k
Thanks @Ram I'll add that to the intro. I'm the admin on my machine so I haven't found it necessary to install any other way. I'll try a fr…
Comment: Downloading the raw microarray data from GEO
by
GenoMax
141k
No GPR files with this data unless you ask the submitters for them directly. You can find the matrix of data here: https://ftp.ncbi.nlm.nih…
Comment: Cellranger count error: Input FASTQ file ended prematurely
by
GenoMax
141k
That is odd. Thanks for following-up and providing an explanation.
Answer: Cellranger count error: Input FASTQ file ended prematurely
by
bp22
▴
70
Dear all,
The reason for the error was due to the index (I1) fastq files, for example `SI-GA-A1_1_S1_L001_I1_001.fastq.gz` having a lo…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
by
Ram
43k
Your tutorial required `sudo` and thus is not doable for a majority of people. Any alternative to `sudo snap`?
Comment: Should I apply doublet detection for each pool seperately?
by
Ram
43k
Do not delete posts that have received feedback,
Comment: QC exclusion of A/T or G/C alleles to avoid strand issues
by
_quantum_girl_
▴
10
They aren't merging any datasets. Just for reference the paper is this: https://www.nature.com/articles/s41380-022-01674-9#MOESM1. Citing: …
Comment: RNA seq differential expression analysis
by
BioinfGuru
★
1.7k
https://help.galaxyproject.org/
Traffic: 2681 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6