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537 results • Page
3 of 11
Sort: Rank
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Votes
Replies
0
votes
1
reply
184
views
How to find marker genes for whole tissue from several different sub-tissue scRNAseq datasets
prediction
marker
scRNAseq
updated 8 days ago by
jv
★ 1.2k • written 9 days ago by
nickeener
▴ 50
1
vote
1
reply
197
views
merging structural variants from various callers into one vcf file (long read sequencing)
vcf
longread
updated 9 days ago by
LChart
2.6k • written 9 days ago by
Shaghayegh
▴ 20
0
votes
0
replies
130
views
extracting gencode 3utr and 5utr as part of R pipeline
5utr
3utr
9 days ago by
Agamemnon
▴ 80
1
vote
4
replies
349
views
Pre-processing for Agilent microarray data?
affymetrix
microarray
gene
agilent
rna
updated 4 days ago by
solarchan7
• 0 • written 9 days ago by
survive
• 0
0
votes
2
replies
366
views
Trouble annotating heatmap with pheatmap. Error in annotation_col[colnames(mat), , drop = F] : subscript out of bounds
pheatmap
9 days ago by
oleksandra.kalnytska
• 0
0
votes
0
replies
119
views
statistical comparison between accession based on their origins
ttest
ANVOA
updated 9 days ago by
GenoMax
129k • written 9 days ago by
이정아(자연과학대학 화학생명분자과학부)
• 0
0
votes
0
replies
141
views
Error in .Call2("C_solve_user_SEW", refwidths, start, end, width, translate.negative.coord
maftools
updated 9 days ago by
Ram
39k • written 9 days ago by
alwayshope
▴ 20
0
votes
0
replies
139
views
LAD/TAD and recombination hotspot data
hotspot
recombination
lad
tad
10 days ago by
Alex Reynolds
35k
3
votes
6
replies
550
views
Convert Nanopore Fast5 files to Fasta format
fast5
fasta
Nanopore
8 days ago by
Sowmya Pulapet
▴ 30
0
votes
5
replies
335
views
Problem with GPU guppy_basecaller and SLURM
nanopore
guppy
updated 9 days ago by
Medhat
9.6k • written 10 days ago by
kenneditodd
▴ 10
0
votes
1
reply
179
views
Co-Expression of All Genes with a Single Gene (Spatial Transcriptomics)
Transcriptomics
Correlation
Seurat
scRNA-seq
Spatial-Transcriptomics
updated 9 days ago by
jv
★ 1.2k • written 10 days ago by
ivingan
• 0
0
votes
1
reply
189
views
How to find complete overlaps between between multiple .bed files with bedtools
bedtools
granges
updated 10 days ago by
Pierre Lindenbaum
154k • written 10 days ago by
Alewa
▴ 110
0
votes
2
replies
201
views
Don't see uploaded files for linking in EGA (European Genome Archive)
EGA
10 days ago by
optimistsso4co3
▴ 100
0
votes
0
replies
121
views
Tools for network enrichment analysis in bacteria
network-enrichment-analysis
10 days ago by
langziv
▴ 30
1
vote
2
replies
2.0k
views
Error in Adding 1000Genomes Ancestral Allele info: Using VCF tools fill-aa
vcftools
samtools
faidx
tabix
1000Genomes
updated 10 days ago by
barslmn
★ 1.6k • written 5.6 years ago by
shrutishreyajha
▴ 10
1
vote
3
replies
341
views
Variant calling analysis
vcf
variant-calling
wgs
updated 10 days ago by
Medhat
9.6k • written 11 days ago by
namck
• 0
0
votes
0
replies
170
views
Comparing gene expression with copy number variation in TCGA
BiomaRt
TCGABiolinks
11 days ago by
Will Yam
▴ 30
0
votes
0
replies
541
views
Generating variant read count matrix, total read count matrix and binary/ternary mutaion matrix for SNV from scDNAseq FASTQ files
SNV
scDNAseq
mutationMatrix
tumorPhylogney
mutaion
12 days ago by
supernovamik
• 0
0
votes
1
reply
258
views
Trimmomatic run error
Trimmomatic
adap
updated 11 days ago by
Pierre Lindenbaum
154k • written 12 days ago by
eshrakaali_p
• 0
1
vote
5
replies
513
views
kraken on nt library
kraken
nt
9 days ago by
Francois Piumi
▴ 30
3
votes
1
reply
259
views
chromosome location to gene name and aa change
variant-annotation
11 days ago by
Zi
• 0
0
votes
1
reply
251
views
DESeq2 : parameter of Negative Binomial model in a context of gene expression
rnaseq
DESeq2
NB
12 days ago by
Picasa
▴ 640
0
votes
1
reply
240
views
Are there any recommended tools for tumor target sequencing data downstream analysis
target
tumor
downstream
compare
plots
12 days ago by
alwayshope
▴ 20
0
votes
0
replies
189
views
CRISPR-DAV
knockout
indel
CRISPR
detection
CRISPR-DAV
12 days ago by
Sowmya
• 0
0
votes
2
replies
356
views
modelling time series data from different individuals
modeling
8 days ago by
Sara
▴ 220
0
votes
0
replies
195
views
Multiple plot are displayed on one plot by matplotlib
Rstudio
python
r
12 days ago by
ali.kian.saei
▴ 10
0
votes
0
replies
210
views
What is the node_id in vg giraffe output (gaf or gam)?
giraffe
vg
13 days ago by
Hendricks27
• 0
0
votes
1
reply
332
views
Reducing the size of raw sequencing data in fastq format by using a simplified quality score
fastq
compression
updated 11 days ago by
ATpoint
72k • written 13 days ago by
rls_08
▴ 40
1
vote
3
replies
356
views
how to do an "reverse" oncoplot in maftools
maftools
Rstudio
updated 9 days ago by
Ram
39k • written 13 days ago by
JULIA HELENA
• 0
0
votes
0
replies
185
views
How to do diferential expression analysis of 2 closely related species
Trinity
EdgeR
Diferential-Expression
updated 13 days ago by
Ram
39k • written 13 days ago by
Fernando
• 0
0
votes
0
replies
192
views
Error in running Abyss assembler for chicken genome assembly
abyss
assembly
genome
fasta
6 days ago by
Maliha
▴ 20
0
votes
0
replies
200
views
Principal component analysis using plotPCA of deepTools
plotpca
deeptools
pca
13 days ago by
Rajendra KC
▴ 20
4
votes
6
replies
530
views
How to pass from DNA to AA fasta
genetics
updated 10 days ago by
Buffo
★ 2.2k • written 13 days ago by
Anderson Stiward
• 0
2
votes
0
replies
213
views
Reference request for getting the big picture of gene taxonomy
genes
textbook
13 days ago by
garbagelister
▴ 20
0
votes
0
replies
192
views
Correct tRNA genes nomenclature in plant chloroplast genomes
chloroplast
tRNA
genes
genome
13 days ago by
Denis
▴ 270
0
votes
0
replies
174
views
Perl debugging help - miRWoods
perl
miRNA
13 days ago by
Gill
• 0
2
votes
6
replies
544
views
how to make a venn plot with data frame in R
plot
R
Venn
11 days ago by
satva72
• 0
0
votes
0
replies
204
views
normalize.quantiles in preprocessCore package with data containing missing values
preprocessCore
missing
normalize.quantiles
value
14 days ago by
tkmt
• 0
0
votes
3
replies
348
views
Picard ribosome intervals list
Picard
13 days ago by
mropri
▴ 140
0
votes
0
replies
205
views
Significance of "orientation" flag in FilterMutectCalls output
filtermutectcalls
gatk
VCF
mutect2
SNP
14 days ago by
bt_cepo
▴ 20
7
votes
12
replies
859
views
Integrated genes from bulk RNA seq and ATAC seq
bulk-RNA
integrated
ATAC-seq
updated 8 days ago by
Sasha
▴ 180 • written 14 days ago by
Chris
▴ 100
6
votes
6
replies
555
views
On "wings" in volcano plots...
DEG
volcano
DGE
statistics
DE
updated 13 days ago by
ATpoint
72k • written 14 days ago by
kalavattam
▴ 120
0
votes
0
replies
195
views
Comparison between z-scores of protein and mRNA levels
expression
Statistics
14 days ago by
Camilo Andres
▴ 30
1
vote
1
reply
194
views
DESeq2 with multiple factors
DESeq2
updated 14 days ago by
jv
★ 1.2k • written 14 days ago by
Nelo
• 0
2
votes
2
replies
298
views
DESeq factor order
DESeq2
14 days ago by
Chris
▴ 10
2
votes
1
reply
261
views
scRNAseq (bioconductor) data to seurat object
bioconductor
seurat
scRNAseq
updated 14 days ago by
ATpoint
72k • written 14 days ago by
Alex
▴ 20
1
vote
2
replies
228
views
StringTie across datasets
novel
transcripts
stringtie
rna-seq
14 days ago by
Prangan
▴ 20
0
votes
0
replies
190
views
Metatranscriptomics de novo assembly pipeline how to annotate/quantify
SALMON
denovo
rna
RNAspades
metatranscriptomics
15 days ago by
Lily
• 0
3
votes
9
replies
513
views
Estimate sizes of repeats in a especific Gene
CGG
Fragile-X
15 days ago by
Rafael
▴ 10
0
votes
0
replies
169
views
selection of Gene Ontology terms manually
RNAseq
Gene-ontology
GOanalysis
Clusterprofiler
15 days ago by
harish
• 0
537 results • Page
3 of 11
Recent Votes
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Thanks a lot William, I am Clear now
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