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1,000 results • Page
3 of 20
Sort: replies
Rank
Views
Votes
Replies
1
vote
10
replies
907
views
Do monoclonal antibodies have a blocking effect?
block
antibody
offtopic
updated 3 months ago by
Jeremy
▴ 850 • written 3 months ago by
jinyu
▴ 10
8
votes
10
replies
1.7k
views
PyWGCNA
WGCNA
5 months ago by
yoshifumimiya
▴ 40
3
votes
9
replies
3.7k
views
fastqc html file
fastqc
updated 9 months ago by
Ram
41k • written 24 months ago by
Cihan
• 0
0
votes
9
replies
743
views
gene id
gene-id
NCBI
updated 5 months ago by
GenoMax
136k • written 5 months ago by
safeassli
• 0
4
votes
9
replies
8.2k
views
bcftools consensus command
vcf
bcftools
updated 8 months ago by
Ram
41k • written 3.9 years ago by
Begonia_pavonina
▴ 120
2
votes
9
replies
2.3k
views
SAM file quality check without converting into BAM
Alignment
SAM
updated 8 months ago by
Ram
41k • written 4.5 years ago by
vaish01kv
• 0
1
vote
9
replies
2.9k
views
bam to fasta error using samtools
fasta
bam
updated 8 months ago by
Ram
41k • written 6.7 years ago by
christacaggiano
▴ 60
3
votes
9
replies
587
views
Understanding this analysis pipeline
reads
updated 5 months ago by
Ram
41k • written 5 months ago by
artemchuki
• 0
1
vote
9
replies
1.5k
views
kallisto bootstrap / condo installation problem
hfd5
kallisto
condo
updated 7 months ago by
dsull
★ 5.1k • written 7 months ago by
micecanfly
▴ 10
1
vote
9
replies
321
views
Htseq-count reads with missing mate encountered
htseq
htseq-count
16 days ago by
Bjorn
• 0
0
votes
9
replies
5.0k
views
Calculating FPKM and TPM by hand from htseq-count output?
RNA-Seq
rna-seq
htseq
FPKM
TPM
updated 3 months ago by
ATpoint
78k • written 4.6 years ago by
Joel Wallenius
▴ 180
0
votes
9
replies
905
views
Sum the values based on the variant names and give the result in stats format
coding
updated 9 months ago by
Ram
41k • written 9 months ago by
smrutimayipanda
▴ 20
0
votes
9
replies
1.2k
views
Chipseq analysis on repeat genes
galaxy
repeatmasker
ChIP-seq
repeat-elements
ATAC-seq
updated 9 weeks ago by
rfran010
▴ 880 • written 11 weeks ago by
pb11
▴ 10
0
votes
9
replies
1.4k
views
Running ANNOVAR table_annovar.pl. Error convert2annovar.pl: not found
ANNOVAR
perl
Annotation
VCF
11 months ago by
vvs.hazia
▴ 10
1
vote
9
replies
891
views
Trying to edit VCF file
VCF
R
bcftools
snpsaurus
updated 5 months ago by
Ram
41k • written 5 months ago by
peavy
• 0
2
votes
9
replies
690
views
Read length for single -ended RNA seq data analysis
read-length
fastq
updated 4 months ago by
Ram
41k • written 4 months ago by
vinaya
• 0
1
vote
9
replies
1.4k
views
Error after installation of AGAT
Perl
AGAT
10 months ago by
L_bioinfo
• 0
1
vote
9
replies
614
views
Command line or python RNA-seq read simulator
simulation
RNA-seq
21 days ago by
i.sudbery
18k
0
votes
9
replies
1.9k
views
Microarray analysis in R - target.txt,file,Sample info
R
updated 8 months ago by
Ram
41k • written 2.2 years ago by
bioinformatics
▴ 20
6
votes
9
replies
2.6k
views
How to analyze the scRNA seq Fastq files from NCBI
SRAtool
Cellranger
NCBI
updated 5 months ago by
Ram
41k • written 23 months ago by
aimanbarki
▴ 20
2
votes
9
replies
668
views
Salmon (or other pseudo-mappers) for multi-species RNAseq read filtering
STAR
Salmon
mapper
aligner
RNAseq
2 days ago by
ian.will
▴ 10
0
votes
9
replies
667
views
User's choice for three- or single- letter amino acids in reading frames
python
updated 7 months ago by
Ram
41k • written 7 months ago by
kianamajd45
• 0
1
vote
9
replies
1.1k
views
Couldn't get a file descriptor referring to the console multiqc
multiqc
updated 6 months ago by
Ram
41k • written 17 months ago by
smithkthedale
▴ 10
0
votes
9
replies
581
views
Deseq2 error
R
deseq2
8 weeks ago by
sgadila
• 0
0
votes
9
replies
935
views
grep multiple lines form file
shell-script
grep
updated 5 months ago by
Ram
41k • written 3.5 years ago by
harry
▴ 30
4
votes
9
replies
688
views
Snakemake issue with wrappers
Python
Snakemake
24 days ago by
Begonia_pavonina
▴ 120
1
vote
9
replies
3.0k
views
build databses for genome using snpEff
annotation
SNP
snpEff
updated 3 months ago by
nehakhilwani18
• 0 • written 5.3 years ago by
StudentBio
• 0
6
votes
9
replies
1.6k
views
Error when runing Bowtie2: (ERR): bowtie2-align exited with value 1
BAM
Bowtie
updated 6 months ago by
Ram
41k • written 10 months ago by
luzglongoria
▴ 50
0
votes
9
replies
1.2k
views
how to get fastq file from cellranger?
Cellranger
mkfastq
updated 11 months ago by
GenoMax
136k • written 11 months ago by
Info.shi
▴ 30
4
votes
9
replies
974
views
Aligning fastq files using STAR
RNA
loop
STAR
HG
Sequencing
11 months ago by
kcarey
• 0
0
votes
9
replies
1.5k
views
Differential gene expression analysis with no replicates using edgeR
edgeR
RNA-seq
DEG
updated 11 months ago by
Ram
41k • written 12 months ago by
Apex92
▴ 280
3
votes
9
replies
473
views
STARsolo seg fault without readMapNumber flag
STAR
RNA-seq
STARsolo
Velocyto
updated 5 weeks ago by
Ram
41k • written 5 weeks ago by
rbronste
▴ 420
0
votes
9
replies
3.1k
views
The soapfuse running problem
soapfuse
updated 10 months ago by
Ram
41k • written 8.5 years ago by
syxbestmayer
▴ 20
0
votes
9
replies
587
views
fragments file generation via Sinto from CellRanger output
scATAC
alignment
scRNA
Sinto
10x
5 weeks ago by
ntsopoul
▴ 50
0
votes
9
replies
4.2k
views
Merge BAM files for a lane with multiplexed samples.
multiplexing
samtools
baserecalibrator
gatk
updated 11 months ago by
Ram
41k • written 8.5 years ago by
Timothée Flutre
▴ 20
4
votes
9
replies
2.2k
views
Blast+ remote database names
blast
remote
databases
Blastplus
updated 4 months ago by
GenoMax
136k • written 23 months ago by
Komalharini
• 0
11
votes
9
replies
2.3k
views
samtools piping with awk/ bash commands -> Wonky things happen!!!
bash
samtools
awk
updated 11 months ago by
Ram
41k • written 8.5 years ago by
QVINTVS_FABIVS_MAXIMVS
★ 2.5k
2
votes
9
replies
835
views
Calculation of TMB on gene level
genomics
updated 9 weeks ago by
svp
▴ 600 • written 9 weeks ago by
smrutimayipanda
▴ 20
6
votes
9
replies
5.1k
views
Best Possible set of Python interview questions for Bioinformatics, that a recruiter can ask?
python
updated 8 months ago by
Ram
41k • written 8.6 years ago by
gaurav.singh
▴ 10
0
votes
9
replies
1.2k
views
Samtools sam to bam error
samtools
updated 4 weeks ago by
Andrea
• 0 • written 19 months ago by
kb_93
▴ 10
3
votes
9
replies
801
views
Estimate sizes of repeats in a especific Gene
CGG
Fragile-X
6 months ago by
Rafael
▴ 10
1
vote
9
replies
825
views
gene annotation
gtf
gene-annotation
updated 6 months ago by
Ram
41k • written 6 months ago by
ahmad
• 0
0
votes
9
replies
3.4k
views
Viral integration with RNA-seq data
ngs
RNA-seq
updated 8 months ago by
Ram
41k • written 6.2 years ago by
KVC_bioinfo
▴ 590
0
votes
9
replies
3.2k
views
MATLAB Volcano Plot
Microarray
r
RNA-Seq
genome
updated 8 months ago by
Ram
41k • written 5.7 years ago by
bikash2510
▴ 30
3
votes
9
replies
1.6k
views
How to get negative training set if I don't know what constitutes negative?
machine-learning
dna-sequence
blast
updated 25 days ago by
Ram
41k • written 7.2 years ago by
nafizh
• 0
2
votes
8
replies
1.2k
views
When I run Trimmomatic, I continue to get an "unknown trimmer" error and cannot figure out how to fix it.
trimmomatic
updated 9 months ago by
Ram
41k • written 10 months ago by
littlemicrobiologist
• 0
0
votes
8
replies
5.4k
views
miRNA annotation from miRBase 21
miRBase
gene-annotation
next-gen
updated 8 months ago by
Ram
41k • written 9.2 years ago by
bioinforupesh2009.au
▴ 140
3
votes
8
replies
1.2k
views
Query regarding extraction of GTF file
gtf
gff
updated 12 months ago by
seidel
11k • written 12 months ago by
microorganism_001
▴ 30
4
votes
8
replies
3.3k
views
How to reduce the number of SNPs for the Lositan software
Lositan
SNP
updated 5 months ago by
Ram
41k • written 9.1 years ago by
zhaojianli198322
• 0
1
vote
8
replies
641
views
How does one access TCGA controlled data in AWS S3?
tcga
aws
updated 6 weeks ago by
Zhenyu Zhang
★ 1.1k • written 7 weeks ago by
Cmouli
▴ 10
1,000 results • Page
3 of 20
Recent Votes
Answer: GO categorization
Comment: Using metagenome assembly and binning to identify and mitigate contamination in
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C: Expected a file with 2 fields per line. GenomicsDBImport from GATK ?
Answer: Problematic fastq files...How can we trust them?
Comment: Problematic fastq files...How can we trust them?
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Comment: Should I scale all genes in single cell Seurat?
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Thanks, António for your kind and detailed responses. You helped clear my doubt about scaling! Kind Regards, Synat
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[We have this in our FAQ][1]. PANTHER version 18.0, which powers the enrichment analysis on our homepage, has [143 species][2] loaded and …
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Thanks for the feedback fellas! I agree with the aforementioned!
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I'd have to agree there... while you can generally recover a fastq to the point that it is spec-compliant, you don't know how or why the f…
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You added a position dodge on your boxplot but not on your points.
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