3 days ago by
Mamatha Y S
•
0
0
votes
0
replies
128
views
0
votes
1
reply
121
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
Cameron.walker9900
•
0
0
votes
1
reply
116
views
0
votes
1
reply
110
views
0
votes
0
replies
105
views
updated 1 day ago by
Carlo Yague
8.7k
•
written 2 days ago by
Atul K.
•
0
0
votes
1
reply
101
views
updated 14 hours ago by
bk11
★
2.3k
•
written 20 hours ago by
Susmita Mandal
▴
110
0
votes
1
reply
98
views
0
votes
0
replies
97
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
maxime.policarpo
▴
200
0
votes
1
reply
87
views
updated 10 hours ago by
bk11
★
2.3k
•
written 11 hours ago by
alphaflylizard
•
0
0
votes
0
replies
87
views
0
votes
1
reply
84
views
updated 7 hours ago by
GenoMax
141k
•
written 8 hours ago by
v.berriosfarias
▴
140
0
votes
0
replies
81
views
0
votes
0
replies
81
views
1 day ago by
Enrique
•
0
0
votes
0
replies
76
views
0
votes
0
replies
76
views
0
votes
1
reply
74
views
updated 12 hours ago by
Pierre Lindenbaum
161k
•
written 12 hours ago by
Lada
▴
30
0
votes
0
replies
73
views
0
votes
0
replies
72
views
1 day ago by
Gerard
•
0
0
votes
0
replies
68
views
0
votes
0
replies
67
views
0
votes
0
replies
66
views
0
votes
0
replies
66
views
0
votes
0
replies
65
views
1 day ago by
kl
▴
10
0
votes
1
reply
60
views
updated 2 hours ago by
Mensur Dlakic
★
27k
•
written 8 hours ago by
benguyarenbeyaz98
•
0
0
votes
0
replies
59
views
0
votes
0
replies
53
views
14 hours ago by
ohtang7
▴
40
0
votes
0
replies
40
views
0
votes
0
replies
18
views
0
votes
0
replies
3
views
Recent Votes
Recent Locations •
All
Taiwan, 2 minutes ago
Canada, 3 minutes ago
France, 5 minutes ago
USA, 5 minutes ago
India, 9 minutes ago
United States, 12 minutes ago
Russia, 14 minutes ago
Recent Awards •
All
Popular Question to
subhiksha
▴
30
Popular Question to
v.berriosfarias
▴
140
Popular Question to
AdviceSeeker
•
0
Great Question to
Ann
★
2.4k
Scholar to
marco.barr
▴
80
Popular Question to
Kash
▴
110
Recent Replies
Comment: How to compare the quality of assemblies
by
kirillkirilenko
▴
40
A haploid assembly is our goal. For purging we used prefix.p_ctg.gfa (assembly graph of primary contigs).
Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
by
Istvan Albert
100k
What I mean is that no sequencing run can be calibrated with the claimed precision. Where it could correctly distinguish between basecalls …
Comment: HaplotypeCaller - only SNPs
by
analyst
▴
20
After HaplotypeCaller, you can use gatk SelectVariants to extract snps or indels from vcf file ([link to command][1])
[1]: https://gatk…
Comment: GTF file for Rhinolophus sinicus
by
atowns21
•
0
Ah gotcha. I guess what doesn't make sense to me is why a [paper][1] published in 2022 uses that reference genome.
[1]: https://www.na…
Answer: Wilcox test using data slot (log normalized count values) of scRNA-seq between t
by
yxwucq
•
0
The best way is to generate a pseudo-bulk aggregation then apply edgeR or DESeq2. You can also directly use wilcoxon on sc-level, since man…
Comment: How to solve this RoseTTAFold colaboratory error?
by
Mensur Dlakic
★
27k
There is a dedicated Discord group that deals with everything related to ColabFold and its derivatives. Below is an invitation to join that…
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
atowns21
•
0
Hmm, okay I'm not sure what is going on, but here is what I did:
1. Downloaded a single fastq: `parallel-fastq-dump --tmpdir . --threads …
Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
by
HyperEvo
•
0
Ok, thank you so much~
Comment: GTF file for Rhinolophus sinicus
by
GenoMax
141k
I was able to get the GTF file. I tried the fasta genome and it seemed to work but I did not complete the download. If you choose to ignore…
Comment: some error in building kraken2 database
by
Art1ess
•
0
I have 2 files output, no error logs...
the .kreport file: 100.00 160136511 160136511 U 0 unclassified
head .res…
Comment: TCGA2STAT Error: Firehose connection
by
LauferVA
4.2k
agree.
from a data-centric (rather than software centric) standpoint, it shouldn't be hard to get the TCGA data you are looking for from o…
Comment: Redirection of Duplicate PMIDs
by
LauferVA
4.2k
yep. in this case id definitely start with the grant numbers themselves as others have indicated. i did not recommend this before due to un…
Comment: GTF file for Rhinolophus sinicus
by
atowns21
•
0
This download doesn't seem to work for me. There is a message on the website saying "Warning: contaminated. Status: RefSeq GCF_001888835.1 …
Answer: HaplotypeCaller - only SNPs
by
Pierre Lindenbaum
161k
Filter the vcf dowstream after haplotypecaller using bcftools or gatk variantfiltration
Answer: Gene set enrichment analysis differences between 2020 and 2024
by
geneontologyhelp
▴
380
We have releases about monthly in order to keep our data accurate and reflect current understanding. In 4 years, there have been about 40 r…
Traffic: 1795 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6