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1,000 results • Page
3 of 20
Sort: Views
Rank
Views
Votes
Replies
1
vote
1
reply
2.8k
views
Comparing time series expression data
time-series
gene-expression
updated 10 months ago by
Ram
43k • written 6.7 years ago by
The
▴ 180
0
votes
3
replies
2.8k
views
Circos plot for ecoli genome
rna-seq
circos
updated 7 months ago by
Ram
43k • written 7.3 years ago by
raya.girish
▴ 30
0
votes
3
replies
2.8k
views
Generate GTF/GFF file (coordinates) from a FASTA annotated file.
Assembly
genome
updated 10 months ago by
Ram
43k • written 4.6 years ago by
marquezg48
• 0
0
votes
4
replies
2.8k
views
Music Tool Integration To Galaxy Ngs
music
galaxy
updated 9 months ago by
Ram
43k • written 10.1 years ago by
Chetan Joshi
▴ 20
1
vote
4
replies
2.8k
views
removing confounding batch effect with RUVseq
RUVseq
RNA-Seq
batch-effect
DESeq2
updated 18 hours ago by
Ram
43k • written 5.1 years ago by
grant.hovhannisyan
★ 2.6k
1
vote
1
reply
2.8k
views
Hmmer Alignment input parse error
alignment
hmmer
updated 11 months ago by
Ram
43k • written 6.8 years ago by
hivemind
▴ 20
0
votes
1
reply
2.7k
views
Can't make sva comparison despite very distinct batch effects
sva
batch-effect
updated 15 hours ago by
Ram
43k • written 6.2 years ago by
jjrin
▴ 40
0
votes
5
replies
2.7k
views
Visualize VarScan2 Copy Number Aberrations in IGV
VarScan2
sequence
alignment
IGV
updated 9 months ago by
Ram
43k • written 8.0 years ago by
plumgwodehouse
• 0
3
votes
3
replies
2.7k
views
WGCNA Labeled Heatmap
heatmap
wgcna
updated 6 months ago by
Ram
43k • written 2.6 years ago by
Anand
▴ 40
0
votes
0
replies
2.7k
views
Are secondary alignments (SAM) produced by STAR aligner linked with MAPQ score?
alignment
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
Claudio
• 0
0
votes
2
replies
2.7k
views
How to get Haplotype file from PLINK format data
SNP
PLINK
updated 11 months ago by
Ram
43k • written 5.9 years ago by
bha
▴ 80
0
votes
1
reply
2.7k
views
how to read h5 file in Seurat if its structure is not like 10x h5 file structure?
RNA-Seq
single-cell
scRNA-seq
Seurat
R
updated 7 months ago by
Ram
43k • written 2.3 years ago by
fifty_fifty
▴ 60
0
votes
4
replies
2.7k
views
MACS2 BAMPE and BEDPE gave dramatically different "mean fragment size"
ChIP-Seq
updated 24 days ago by
axol0tl
• 0 • written 6.5 years ago by
Xinwei Han
• 0
1
vote
1
reply
2.7k
views
Plotting a PCA Plot from SVASeq results
pca
ruvseq
sva
svaseq
batch-effect
updated 1 day ago by
Ram
43k • written 6.2 years ago by
jjrin
▴ 40
5
votes
7
replies
2.7k
views
DESeq2 for differential gene expression on GTEx dataset
differential-gene-expression
RNA-Seq
GTex
DESeq2
updated 8 days ago by
Ram
43k • written 6.4 years ago by
vikram
▴ 10
2
votes
3
replies
2.7k
views
Merge really large amount of Seurat objects
Seurat
9 months ago by
Andy
▴ 120
0
votes
0
replies
2.7k
views
GROMACS RMSD COMMANDS
gromacs
updated 9 months ago by
Ram
43k • written 8.3 years ago by
adammbbs
▴ 10
1
vote
3
replies
2.7k
views
g++: error:unrecognized command line option ‘-std=c++2a’
gcc
updated 11 months ago by
Rob
6.5k • written 11 months ago by
wangjincheng
• 0
1
vote
5
replies
2.7k
views
Calculating distance matrix of RNA-seq data
Dynamic-Time-Warping
R
time-series
updated 10 months ago by
Ram
43k • written 6.1 years ago by
zizigolu
★ 4.3k
1
vote
1
reply
2.7k
views
trinity assembly error, run failed
trinity
rna-seq
updated 7 months ago by
Ram
43k • written 7.9 years ago by
nikelle.petrillo
▴ 110
0
votes
0
replies
2.6k
views
Comparing lists generated by Counter() and .most_common() for AA seqs
python
amino-acid
updated 1 day ago by
Ram
43k • written 9.9 years ago by
st.ph.n
★ 2.7k
4
votes
7
replies
2.6k
views
low bootstrap value?
phylogeny
genome
alignment
updated 10 months ago by
Ram
43k • written 4.8 years ago by
Kumar
▴ 120
4
votes
14
replies
2.6k
views
Is it possible to annotate single genes by snpeff
snp
vcf
updated 9 months ago by
Ram
43k • written 6.7 years ago by
misbahabas
▴ 70
0
votes
1
reply
2.6k
views
get counts by gene for single cell rna seq
scRNA-seq
single-cell
updated 10 months ago by
Ram
43k • written 3.1 years ago by
das2000sidd
▴ 30
2
votes
4
replies
2.6k
views
DESeq2 inconsistent results
differential-gene-expression
RNA-Seq
DESeq2
updated 8 days ago by
Ram
43k • written 8.0 years ago by
Chris Gene
▴ 80
0
votes
0
replies
2.6k
views
monocle clustering cells without marker genes error
R
RNA-Seq
monocle
updated 9 months ago by
Ram
43k • written 5.7 years ago by
hsu
▴ 40
1
vote
0
replies
2.6k
views
Running Multiple Alignments in MEGA with a script produces errors.
next-gen
RNA-Seq
MEGA
multiple-alignment
updated 11 months ago by
Ram
43k • written 8.1 years ago by
rachelrodgers12
▴ 10
4
votes
9
replies
2.6k
views
Blast+ remote database names
blast
remote
databases
Blastplus
updated 9 months ago by
GenoMax
141k • written 2.3 years ago by
Komalharini
• 0
1
vote
4
replies
2.6k
views
Using a Multiple Seq Alignment tool for pairwise alignments possible?
multiple-sequence-alignment
msa
alignment
updated 11 months ago by
Ram
43k • written 8.0 years ago by
nchuang
▴ 260
0
votes
7
replies
2.6k
views
How to perform gene annotation in kallisto?
Gene
kallisto
annotation
updated 7 months ago by
호성
• 0 • written 2.6 years ago by
synat.keam
▴ 100
0
votes
3
replies
2.6k
views
Picard's Tool MarkDuplicates problem
picard
updated 10 months ago by
Ram
43k • written 4.2 years ago by
harmadikemil
• 0
0
votes
0
replies
2.6k
views
Removing batch effects from methylation beta values for molecular subtyping/cluster analysis
clustering
beta-values
batch-effect
methylation
updated 1 day ago by
Ram
43k • written 6.7 years ago by
alecmchiu
• 0
4
votes
6
replies
2.6k
views
Convert Nanopore Fast5 files to Fasta format
fast5
fasta
Nanopore
11 months ago by
Sowmya Pulapet
▴ 70
3
votes
7
replies
2.5k
views
6 follow
Online BLAST search using R
BLAST
R
updated 9 weeks ago by
SequenceServer
▴ 140 • written 2.7 years ago by
accibio
▴ 20
0
votes
3
replies
2.5k
views
PLINK can't find my files?
software-error
plink
windows
SNP
updated 4 months ago by
irene.treccani.work
• 0 • written 7.5 years ago by
stephanie.langevin
• 0
0
votes
4
replies
2.5k
views
picard markduplicate output smaller file
picard
markduplicates
gatk
updated 10 months ago by
Ram
43k • written 5.2 years ago by
Peter Chung
▴ 200
0
votes
6
replies
2.5k
views
Variable read length distribution after cutadapt running for my ATAC-seq datasets
cutadapt
read-length
alignment
ATAC-seq
updated 10 months ago by
Ram
43k • written 3.9 years ago by
yaoyao20152031
• 0
0
votes
3
replies
2.5k
views
Create small BAM file with pysam and iterate over reads
samtools
bam
pysam
updated 9 months ago by
Ram
43k • written 6.5 years ago by
lebedana21
• 0
1
vote
1
reply
2.5k
views
problem with updating trinity
software-error
trinity
updated 9 months ago by
Ram
43k • written 5.4 years ago by
ashokkumar.mb
• 0
2
votes
1
reply
2.5k
views
Converting blastn output to VCF (for SNPs): what is the quickest way?
VCF
blast
SNP
xml
updated 9 months ago by
Ram
43k • written 6.0 years ago by
Matteo Schiavinato
★ 3.6k
1
vote
4
replies
2.5k
views
MesKit error message - Join columns must be present in data.
MesKit
R
updated 9 months ago by
bataibence
• 0 • written 14 months ago by
CH1374
▴ 10
0
votes
0
replies
2.5k
views
Analysis and tools for gene/pathway conservation
evolution
updated 10 months ago by
Ram
43k • written 9.0 years ago by
hbw
▴ 90
1
vote
8
replies
2.4k
views
Using NCBIs EDirect to download pubmed abstract
edirect
pubmed
NCBI
updated 9 months ago by
Ram
43k • written 5.8 years ago by
zorn21g
• 0
0
votes
2
replies
2.4k
views
Error while running MEGAX
multiple-sequence-alignment
MEGAX
updated 11 months ago by
Ram
43k • written 5.9 years ago by
Mohak
▴ 20
0
votes
0
replies
2.4k
views
Filtering using TLOD score in MuTect2?
RNA-Seq
Somatic-Mutation
Variant-Calling
updated 22 days ago by
Ram
43k • written 6.2 years ago by
Sharon
▴ 600
5
votes
5
replies
2.4k
views
Quickly retrieve reference genome sequence within python
sequence
python
updated 5 months ago by
Feng Tian
▴ 20 • written 5.6 years ago by
gewa
▴ 20
4
votes
6
replies
2.4k
views
Why weblogo of biopython doesn't work?
Biopython
Weblogo
updated 10 months ago by
minakshiboruahassam
• 0 • written 20 months ago by
Plus
▴ 20
1
vote
4
replies
2.4k
views
Batch effect control in GWAS data.
Batch-effect
omniexpress
GWAS
GSA
updated 18 hours ago by
Ram
43k • written 4.8 years ago by
saksis.rihards
▴ 10
5
votes
8
replies
2.4k
views
SV calling using giraffe/vg
vg
Giraffe
calling
structural
variant
updated 8 months ago by
Jordan M Eizenga
▴ 460 • written 15 months ago by
TN
• 0
2
votes
6
replies
2.4k
views
No best K value found
Assembly
Kmergenie
updated 4 months ago by
shaileshdesai76
• 0 • written 7.2 years ago by
kspata
▴ 80
1,000 results • Page
3 of 20
Recent Votes
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Answer: Assume "yes" as the answer to any prompts with bioconda
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Answer: Assume "yes" as the answer to any prompts with bioconda
Answer: Assume "yes" as the answer to any prompts with bioconda
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You can't. The data does not exist. UniProt only annotates where a lysine is know to be acetylated. There is no way that UniProt can know w…
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Yes, that's what I meant.
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Is is this one - KOREF ? There might be multiple versions. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA294231/ If it is, then take that…
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