Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this week
all time
today
this week
this month
this year
114 results • Page
3 of 3
Sort: Views
Rank
Views
Votes
Replies
0
votes
0
replies
78
views
Creating a custom ontology for peptides
ontology
peptide
1 day ago by
Mathew
• 0
0
votes
0
replies
76
views
Combine rename and rmdup in SeqKit to remove duplicate sequences and append N in header? Sort by occurence?
seqkit
fasta
1 day ago by
Broccoli
• 0
0
votes
1
reply
74
views
Looking for RPIP Illumina kit probe sequences
Sequences
Illumina
updated 17 hours ago by
GenoMax
140k • written 17 hours ago by
David Tachiquín
• 0
0
votes
0
replies
73
views
SPOTlight deconvolution logFC, logFC cohen or mean.AUC
spatial-transcriptomics
SPOTlight
logFC
deconvolution
updated 20 hours ago by
Ram
43k • written 1 day ago by
M'zelle
• 0
0
votes
0
replies
72
views
Is there a good tool/reference for PBP and porin analysis
PBP
porin
1 day ago by
blur
▴ 280
0
votes
0
replies
65
views
Contradictions in GSEA results
GSEA
Enrichment-analysis
PEA
updated 19 hours ago by
Ram
43k • written 19 hours ago by
Tolga
▴ 20
0
votes
0
replies
60
views
Illumina Dna Prep kit for sequencing phage linear genomes
tagmentation
transposons
phagetermini
sequencing
19 hours ago by
alenew.am
• 0
0
votes
0
replies
39
views
Tissue specific mRNA expression dataset in human and mouse
tissue
specificity
11 hours ago by
Shicheng Guo
★ 9.4k
1
vote
0
replies
38
views
Synthetic lethality and cancer database
interaction
lethal
synthetic
9 hours ago by
Shicheng Guo
★ 9.4k
0
votes
0
replies
31
views
Convert to ENTREZGENE
maize
ENTREZGENE
8 hours ago by
sansan_96
▴ 50
0
votes
0
replies
24
views
Bowtie2 alignment rate
galaxy
alignment
Bowtie
rate
5 hours ago by
pavithraashokkumar818
• 0
0
votes
0
replies
21
views
Alignment with new reference
alignment
2 hours ago by
marco.barr
▴ 30
0
votes
0
replies
19
views
Variant calling of GBS data for polyploid plant
GBS
variants
polyploid
plant
5 hours ago by
analyst
▴ 10
0
votes
1
reply
12
views
How do I get the gene annotations as a text file from a genebank file?
genebank
sequence-annotation
updated 20 minutes ago by
BioinfGuru
★ 1.6k • written 1 hour ago by
eae6d2e7
• 0
114 results • Page
3 of 3
Recent Votes
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Volume II
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
Comment: Gene reads all zero for each sample
Synthetic lethality and cancer database
Answer: log2(TPM+1)
Comment: Error in openning FastQC
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Recent Locations •
All
Dublin, Ireland,
just now
United Kingdom,
1 minute ago
Italy,
5 minutes ago
Netherlands,
6 minutes ago
Hong Kong,
8 minutes ago
Germany,
10 minutes ago
France,
11 minutes ago
Recent Awards •
All
Teacher
to
Pierre Lindenbaum
160k
Popular Question
to
brian.fristensky
▴ 460
Popular Question
to
Ann
★ 2.4k
Commentator
to
GenoMax
140k
Commentator
to
Devon Ryan
104k
Popular Question
to
amitpande74
▴ 20
Popular Question
to
beacamara
• 0
Recent Replies
Comment: Mapping ortholog human and mouse transcript
by
BioinfGuru
★ 1.6k
That error is on the server side, nothing to do with you, and is very common. Usually the fix is to try again in an hour, or to insert host…
Comment: Nanopore multisample variant calling
by
emilydolivo97
• 0
hello @colindaven , Did you find a suitable tool for this purpose please ? I'm dealing with fungal dataset
Comment: How do I get the gene annotations as a text file from a genebank file?
by
BioinfGuru
★ 1.6k
Can you upload or post a link to the genbank file please?
Comment: Mapping ortholog human and mouse transcript
by
manaswwm
▴ 490
I usually perform biomaRt queries with their `getBM()` function where I list the input using `filter` and `values` option and my request in…
Comment: DESeq2 and normalization
by
JH
• 0
Thank you for your response. I have often seen commands like dds <- estimateSizeFactors(dds) normalized_counts <- counts(dds, normalized=T…
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
by
Mohamed Abderrahmane
▴ 10
It's the case that there's no indication of multi-threading in the documentation. However, it made me wonder why the developers would restr…
Answer: Is RNAseq data from a monoclonal cell line technically considered scRNAseq?
by
Soheil
▴ 90
Bulk RNAseq from any sample is still considered a bulk sample. Running bulk RNA sequencing on a sample with any level of cell type/state c…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Yikes. Well, this is from an Illumina MiniSeq. Sure, I will use alignment, but only to remove host reads. Then the remaining reads will go …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
This is going to be tough to diagnose. Are you going to align to a reference? If so go ahead with the alignments to see if alignments turn …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Thank you for replying. I have separated the reads with at least one N on them and they account for 0.2% of the total reads in the file (8'…
Comment: Error running local blastn in R using system2
by
Mensur Dlakic
★ 26k
The `-db data/nt_euk` switch means that in your current directory you have a subdirectory called `data`, and all the `nt_euk` files are in …
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your opinion. I will try with lower LEADING and TRAILING bases. By the way, I tried to set `keepBothReads:true` through sear…
Comment: Error in openning FastQC
by
GenoMax
140k
At this point it would be beneficial to learn some of the basics of command line. Please use this UNIX tutorial since you seem to be new to…
Comment: vcf file: number of samples does not match number of columns
by
Pierre Lindenbaum
160k
> ore or have any suggestions for fixing it? it's a problem with your upstream process. You'd better fix it.
Comment: Error in openning FastQC
by
friszd
• 0
after running fastqc -o output.html input.fastq, terminal returns: " Specified output directory 'output.html' does not exist " , when i run…
Traffic: 2172 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6