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An R error by using xhmmScripts in XHMM
genome R software error written 20 minutes ago by Shingo • 10 • updated 14 minutes ago by zx8754 ♦ 6.5k
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46
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Identify cell types based-on RNA-seq/ChIP-seq data
R chip-seq rna-seq sequencing written 11 hours ago by dcheng1 • 0 • updated 2 hours ago by Devon Ryan ♦ 88k
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44
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GO terms from keywords in R
R ontology written 12 hours ago by kakukeshi • 50 • updated 49 minutes ago by EagleEye ♦ 6.2k
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1
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error while making a DegList object on R using edgeR package (Error in colSums(counts) : 'x' must be numeric)
R rna-seq written 17 hours ago by deeksha3696 • 10 • updated 16 hours ago by h.mon ♦ 23k
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108
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5 follow
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Getting these files from different parts of genome
genome bed wgs snp R written 17 hours ago by F • 3.3k • updated 17 hours ago by zx8754 ♦ 6.5k
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Tools to calculate directionality index
R next-gen written 17 hours ago by h.long • 30
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48
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1
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edgeR/csaw design matrix
R chip-seq rna-seq written 17 hours ago by dcheng1 • 0 • updated 15 hours ago by h.mon ♦ 23k
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1
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60
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1
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R packages error - unable to load shared object
R miniconda conda written 19 hours ago by Francis • 10 • updated 19 hours ago by zx8754 ♦ 6.5k
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Batch effect removal on q-RT PCR microRNA expression data
batcheffect R mirna taqman pcr written 20 hours ago by ivna.ivankovic • 0
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How to quantitative identification outlier from technology replication and biological replication
R next-gen rna-seq written 1 day ago by Grace_G • 10
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79
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vcfR for Whole Genome Data
genome R vcf snp vcfr written 1 day ago by jaafari.omid • 10
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1
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55
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1
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Parse NCBI XML sample information into a data frame in R
ncbi R xml written 1 day ago by willnotburn • 40
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81
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Visualize a Bam file as stack reads, not reduced, using Bioconductor
R next-gen written 1 day ago by gybazeta • 0
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1
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9 follow
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How to create a summary statistics data table for omics data?
proteomics R rna-seq statistics written 1 day ago by Wuschel • 110 • updated 1 day ago by Chirag Parsania • 1.4k
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Seurat object can't be imported into monocle:the object type you want to export to is not supported yet
R monocle seurat single cell rna-seq written 2 days ago by yuhongruoyi • 0
4
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113
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WGCNA network Analysis
geo wgcna network tcga R written 2 days ago by biotechuos4 • 0 • updated 2 days ago by zx8754 ♦ 6.5k
6
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1
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104
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1
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How to get short and sweet gene names/description for gene IDs?
proteomics R rna-seq written 3 days ago by Wuschel • 110 • updated 3 days ago by finswimmer ♦ 10k
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91
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iClusterPlus heatmap labeling samples and genes
R snp rna-seq written 3 days ago by d88020 • 10 • updated 3 days ago by Buffo • 1.2k
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70
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R failed to configure hdf5 working with loom files in Seurat
software error R rna-seq written 3 days ago by yuhongruoyi • 0 • updated 3 days ago by RamRS ♦ 20k
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46
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How to use qqman using own data?
gwas R written 5 days ago by nbe • 0
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63
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Sorting taxonomy table
otu_table R next-gen written 5 days ago by arsilan324 • 70
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121
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How to compare samples between two different platforms?
R correlation microarray rna-seq written 6 days ago by newbie • 20
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2
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Can NanoString ncounter miRNA data be analyzed with RNA-Seq tools?
R rna-seq written 6 days ago by myguestp • 0
5
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104
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Correlation Matrix - Big Data - R
R correlation matrix hadoop written 6 days ago by vincentpailler • 50 • updated 6 days ago by Jean-Karim Heriche ♦ 18k
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64
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GOplot and making circle_dat out of microarray and DAVID data
R goplot gene ontology microarray plot written 7 days ago by farzaneafzali • 20
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A large list of chromossome
R list chromossome dataframe written 7 days ago by 1996luanabianca • 0 • updated 7 days ago by zx8754 ♦ 6.5k
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Which hypothesis test I can use in this case?
genome hypothesis test signaificance R written 8 days ago by jinzheng9406 • 0
5
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1
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121
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1
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Bioinformatics question regarding multilevel pie chart
R rna-seq written 8 days ago by saj98 • 100
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News: Conference news: Final list of speakers for DataTech19, Scotland's data science conference
hpc data science news R python written 8 days ago by caterina.constantinescu • 20
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Timeout on getBM() to retrieve snps from locations
R biomart getbm() timeout written 8 days ago by Corentin • 250 • updated 8 days ago by Ben_Ensembl • 940
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