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110
votes
1
answer
22k
views
95 follow
1
answer
Tutorial: Network plot from expression data in R using igraph
R network tutorial rna-seq microarray written 2.6 years ago by Kevin Blighe ♦ 61k
138
votes
5
answers
24k
views
82 follow
5
answers
Tutorial: A few words for R beginners
R beginner swirl tutorial written 5.6 years ago by Parham • 1.5k • updated 3.8 years ago by hed.robin • 30
68
votes
0
answers
59k
views
72 follow
0
answers
Tutorial: Machine Learning For Prediction of Relapse in Cancer - Part 2 - Building A Random Forest Classifier
R tutorial classification cancer written 6.6 years ago by Nicholas Spies • 1.1k • updated 22 months ago by RamRS ♦ 27k
145
votes
4
answers
152k
views
70 follow
4
answers
How Do I Draw A Heatmap In R With Both A Color Key And Multiple Color Side Bars?
R heatmap written 8.4 years ago by Obi Griffith ♦ 18k • updated 12 months ago by sansritisinha • 0
101
votes
9
answers
29k
views
69 follow
9
answers
How To Create Mutation Diagram In R Or In Any Tools?
domain R mutation written 7.5 years ago by henryvuong • 780 • updated 7 months ago by zx8754 ♦ 9.4k
58
votes
0
answers
7.1k
views
66 follow
0
answers
Tutorial: Enrichment Analysis, Clustering and Scoring with pathfindR
pathway R tutorial active subnetwork enrichment written 2.1 years ago by egeulgen • 980
50
votes
3
answers
12k
views
58 follow
3
answers
Tutorial: Machine Learning For Cancer Classification - Part 4 - Plotting A Kaplan-Meier Curve For Survival Analysis
R tutorial written 6.6 years ago by Nicholas Spies • 1.1k • updated 3.1 years ago by jmzeng1314 • 90
62
votes
2
answers
6.3k
views
47 follow
2
answers
Tool: karyoploteR: uncircle your genomes
dataviz R ngs tool karyoploter written 3.1 years ago by bernatgel • 2.6k
54
votes
1
answer
5.8k
views
43 follow
1
answer
Tutorial: Parallel processing in R
R tutorial biocparallel mclapply foreach written 2.8 years ago by Kevin Blighe ♦ 61k
76
votes
2
answers
19k
views
39 follow
2
answers
Tutorial: How to create a mutation landscape (waterfall) plot with GenVisR
R bioconductor graphics tutorial genvisr written 4.3 years ago by Obi Griffith ♦ 18k • updated 23 months ago by avelarbio46 • 0
169
votes
17
answers
19k
views
36 follow
17
answers
Recommend Your Favorite Introductory "R In Bioinformatics" Books And Resources
R bioconductor books written 10.3 years ago by Michael Dondrup ♦ 47k • updated 5.7 years ago by Parham • 1.5k
197
votes
12
answers
34k
views
36 follow
12
answers
Forum: Will Python Take The Place Of R?
R forum python biopython statistics written 7.1 years ago by Medhat ♦ 8.7k • updated 2.6 years ago by jared.andrews07 ♦ 6.2k
96
votes
21
answers
16k
views
34 follow
21
answers
Best Free Text Editor For All Popular Languages (R, Python, Perl Etc..)
perl R text python written 8.3 years ago by John • 1.5k • updated 2.8 years ago by grant.hovhannisyan • 2.0k
81
votes
8
answers
38k
views
34 follow
8
answers
Venn/Euler Diagram Of Four Or More Sets
R written 7.0 years ago by Hunter • 110 • updated 2.2 years ago by lequangminhtri • 30
91
votes
12
answers
23k
views
33 follow
12
answers
Is There Any R Or R / Bioconductor Package That Can Make Circular Plots Like Perl / Circos
R visualization written 8.4 years ago by John • 1.5k • updated 5.3 years ago by Mo • 920
42
votes
3
answers
141k
views
33 follow
3
answers
How To Update R In Ubuntu ?
R ubuntu written 6.6 years ago by Arpitha Hebbar • 200 • updated 9 weeks ago by brianpenghe • 20
76
votes
0
answers
16k
views
30 follow
0
answers
Tutorial: Heatmaps in R
R tutorial heatmap written 3.9 years ago by Jean-Karim Heriche ♦ 22k
59
votes
4
answers
36k
views
29 follow
4
answers
How To Analyze Imputed Gwas Data
gwas imputation plink snp R written 9.3 years ago by Stephen ♦ 2.7k • updated 23 days ago by Mahantesh Biradar • 30
48
votes
5
answers
20k
views
28 follow
5
answers
Retrieve All Genes Associated With A Go Term
R bioconductor go gene-ontology written 7.9 years ago by enricoferrero • 800 • updated 2.6 years ago by EagleEye ♦ 6.6k
39
votes
3
answers
9.0k
views
25 follow
3
answers
LD-decay in a r2 vs distance(cm) plot
R snp written 2.4 years ago by adele • 60 • updated 2.3 years ago by hewm2008 • 40
23
votes
3
answers
14k
views
23 follow
3
answers
Probability of gene list overlap
gene R overlap written 8.6 years ago by Nasir • 160 • updated 2.2 years ago by Biostar ♦♦ 20
20
votes
1
answer
4.9k
views
23 follow
1
answer
Difference between GO.db, biomaRt, and org.Hs.eg.db in GO annotations
R biomart go go.db written 2.6 years ago by lihaone • 100 • updated 5 months ago by Biostar ♦♦ 20
50
votes
1
answer
27k
views
20 follow
1
answer
Difference Between Mas5 And Rma Normalisation. Which Is More Appropriate When?
R microarray affymetrix data written 9.2 years ago by T. K. • 160 • updated 9.2 years ago by Neilfws ♦ 48k
64
votes
6
answers
55k
views
20 follow
6
answers
How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Sequences In A Single File
fasta next-gen sequencing perl R rna written 8.7 years ago by Hamilton • 280 • updated 2.1 years ago by har-wradim • 30
23
votes
0
answers
3.0k
views
20 follow
0
answers
Tool: pathfindR - Enrichment Analysis using Active Subnetworks
pathway R active subnetwork tool enrichment written 2.3 years ago by egeulgen • 980 • updated 12 days ago by manojkamalanathan711 • 0
30
votes
1
answer
11k
views
20 follow
1
answer
Volcano plot help code
R rna-seq written 2.2 years ago by anasofiamoreira94 • 70 • updated 2.1 years ago by jordi.planells • 190
19
votes
0
answers
2.7k
views
20 follow
0
answers
Tutorial: Showing up and down regulated GO and pathway using enrichR and ggplot2
R tutorial ggplot2 rna-seq written 21 months ago by ahmad mousavi • 480
63
votes
3
answers
4.0k
views
20 follow
3
answers
Could you explain the difference between STAR, KALLISTO, SALMON etc. to experimental Biologist/non-bioinformatician
R next-gen alignment rna-seq assembly written 9 months ago by Wox • 330
34
votes
7
answers
28k
views
19 follow
7
answers
Pathway Analysis In R
pathway gene R written 8.7 years ago by Avoks • 140 • updated 3.3 years ago by theobroma22 • 1.1k
36
votes
6
answers
11k
views
19 follow
6
answers
Annotating Genomic Intervals
bedtools annotation bioconductor R written 7.8 years ago by Stephen ♦ 2.7k • updated 7.8 years ago by Alex Reynolds ♦ 30k
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