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Recent Replies
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A: PCA plot color differentiation by
Kevin Blighe ♦ 55k
I am confident that you know to what these numbers relate? You can set colours manually to any ...
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C: Trimmomatic parameters for Trinity transcriptome assembling by
lieven.sterck ♦ 7.0k
unless for very specific goals, slidingwindow is the more sensible (== most commonly used) approa...
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C: How to down-sample a full data by
dhlsl • 0
thanks, Devon! could you please tell what do you mean by subsampling typically few times? i do un...
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C: Trimmomatic parameters for Trinity transcriptome assembling by
Light92 • 20
I see! So I guess SLIDINGWINDOW is a more accurate approach! Thank you!
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A: RNAseq cell line as a covariate by
Kevin Blighe ♦ 55k
As with everything in bioinformatics, if you have time, try both approaches. I am not sure that a...
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mike.deberardine • 30
From my understanding[*], DESeq2 manages the "multiple testing problem" by performing an initial ...
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A: alternative polyadenylation in RNA seq data by
jared.andrews07 ♦ 5.0k
I don't know what you mean by "alternative polyadenylation". Yes, you will still see polyA adeny...
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A: PCA plot color differentiation by
devarora • 70
Dear Kevin, I found that code on previously mentioned post. The output for > ccm_pca$sa...
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Just want to emphasize that mine is actually only 2 lines long; the other lines were just for exp...
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I tried this and it worked perfectly. However, one confusion I have is if I should normalize the...
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Thanks, plink 2.0 works just fine. The fam files produced by plink 1.9 or plink 2.0 differ in col...
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It is stating that these arguments are not recognised by the function: alter_fun col ...
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