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11
votes
4
answers
157
views
8 follow
4
answers
edgeR gives no DE genes <0.05 FDR
software error R alignment rna-seq written 3 days ago by Jon • 130 • updated 7 hours ago by Antonio R. Franco • 4.1k
0
votes
1
answer
39
views
1
answer
Interpretation the percentage of top 10 mutated gene in plotmafSummary result
R maftools mutation written 13 hours ago by sugus • 40 • updated 11 hours ago by dsull • 140
2
votes
2
answers
188
views
2
answers
Comparing values of a column if it falls between values of two columns of a different data set and creating new column
R awk linux written 1 day ago by eDNAuRNA • 10 • updated 11 hours ago by zx8754 ♦ 8.2k
0
votes
0
answers
41
views
0
answers
ssGSEA for beginners
ssgsea R rna-seq written 13 hours ago by shweta.johari13 • 0
0
votes
0
answers
85
views
0
answers
Failed to install package(ASpli) in R
software error R rna-seq written 1 day ago by qicaibiology • 30
10
votes
2
answers
110
views
5 follow
2
answers
Volcano plot: why is there big FC with big p-values?
gene R written 2 days ago by i.am.filippov • 0 • updated 1 day ago by Timze W • 40
0
votes
0
answers
1.2k
views
0
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visualize enrichment results and compare multiple enrichments
R bioconductor statistic enrichment written 5.1 years ago by dago • 2.5k • updated 2 days ago by Biostar ♦♦ 20
0
votes
0
answers
67
views
0
answers
Importing .txt file and use Limma to normalize it...
R written 2 days ago by rozovski.uri • 0
0
votes
1
answer
72
views
1
answer
Annotation Affymetrix probesets to Gene symbols
gene R rna-seq affymetrix written 2 days ago by mannoulag1 • 60 • updated 2 days ago by Kevin Blighe ♦ 49k
1
vote
0
answers
74
views
0
answers
Best software to visualize a phylogenetic tree coupled to the presence/absence pattern of clusters of orthologous proteins (COGs)
genome R sequence assembly written 3 days ago by rafael_230987 • 0
0
votes
0
answers
40
views
0
answers
Overlapping the novel lncRNAs on mitranscriptome lncRNAs
R mitranscriptome rna-seq gencode lncrna written 3 days ago by newbie • 70
0
votes
1
answer
68
views
1
answer
DEseq2 design with multiple assays, conditions, and replicates
R deseq2 rna-seq written 3 days ago by testtube • 0 • updated 3 days ago by swbarnes2 ♦ 6.7k
1
vote
1
answer
61
views
1
answer
Affymetrix probesets to Gene symbols
gene R rna-seq written 4 days ago by mannoulag1 • 60
2
votes
1
answer
80
views
1
answer
How to calculate per base coverage from the .bam file?
R next-gen rna-seq written 4 days ago by barrypraveen • 20 • updated 4 days ago by ATpoint ♦ 24k
0
votes
0
answers
61
views
0
answers
Threshold lines in EnhancedVolcano package
R enhancedvolcano volcano plot written 4 days ago by sato • 0 • updated 4 days ago by Kevin Blighe ♦ 49k
0
votes
0
answers
69
views
0
answers
Job: Research Scientist Bioinformatics working on scRNA-Seq at Evotec SE (Goettingen, DE)
scrna-seq R job rna-seq written 4 days ago by Manuel Landesfeind • 1.2k
0
votes
1
answer
53
views
1
answer
R AnnotationDbi returning NA for pseudogenes during gene id annotation
annotationdbi R deseq2 pseudogene ensembl written 5 days ago by sg197 • 10 • updated 4 days ago by Kevin Blighe ♦ 49k
1
vote
0
answers
570
views
0
answers
Ensembl transcript id, mismatch between ensembl_transcript_id_version and ensembl_transcript_id
R biomart ensembl written 4 days ago by hardervidertsie • 10 • updated 4 days ago by zx8754 ♦ 8.2k
0
votes
0
answers
58
views
0
answers
News: Course - Metabolomics: from study design to data analysis
metabolomics R bioconductor news written 4 days ago by carlopecoraro2 • 1.2k
2
votes
0
answers
48
views
0
answers
News: Course - Landscape Genomics. Berlin
R news genomics written 4 days ago by carlopecoraro2 • 1.2k
0
votes
0
answers
86
views
0
answers
How to download Chembl IDs?
chemoinformatics downstream analysis R written 5 days ago by bilodate • 0
0
votes
0
answers
75
views
0
answers
Finding a corresponding set of specific-tissue eQTLs for a list of known SNPs
genome R eqtl snp written 5 days ago by spela.salamon • 0
1
vote
2
answers
85
views
5 follow
2
answers
DESeqDataSetFromMatrix giving an error
R written 20 days ago by natheshka • 0 • updated 6 days ago by Quetzal • 0
4
votes
1
answer
104
views
5 follow
1
answer
How to create a dna database that can be analyze with R ?
R database sequencing ngs dna written 6 days ago by Gautier • 0 • updated 6 days ago by Pierre Lindenbaum ♦ 123k
2
votes
1
answer
132
views
1
answer
How to get the ensembl ID and divide my genes into different biotypes?
R clariomdhuman microarray annotation written 6 days ago by jiamacro • 10 • updated 6 days ago by Emily_Ensembl ♦ 19k
2
votes
1
answer
2.7k
views
1
answer
traceback algorithm global alignment in R code
R sequence alignment written 4.3 years ago by gizemtatar • 0 • updated 6 days ago by parkkh1188 • 0
52
votes
3
answers
508
views
14 follow
3
answers
Could you explain the difference between STAR, KALLISTO, SALMON etc. to experimental Biologist/non-bioinformatician
R next-gen alignment rna-seq assembly written 20 days ago by Wuschel • 230
0
votes
1
answer
1.7k
views
1
answer
PopGenome - readData error
software error R popgenome vcf written 3.6 years ago by conny.sjoqvist • 0 • updated 7 days ago by Ace • 60
0
votes
0
answers
70
views
0
answers
Ensembl IDs as input in ReactomePA package in R
R reactomepa written 7 days ago by sainikeshav6 • 0
0
votes
0
answers
43
views
0
answers
Annotate with protein interaction number (R)
R downstream analysis written 7 days ago by bilodate • 0
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