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Enhanced volcano plot - Over-ride colouring scheme with custom key-value pairs for both log2FC and p value
software R deseq2 enhanced volcano plot written 8 minutes ago by kousi31 • 10
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type='apeglm' shrinkage only for use with 'coef'
R rna-seq written 2 hours ago by wuyingncu • 0 • updated 22 minutes ago by genomax ♦ 85k
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DESeq2 design with three treatments and the genes common to all
desq2 R rna-seq written 3 days ago by MaxF • 50 • updated 21 hours ago by Kevin Blighe ♦ 61k
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Reordering legend labels and changing arrow length in Enhanced Volcano
R enhancedvolcano enhanced volcano written 3 days ago by david.zlotkin • 0 • updated 21 hours ago by Kevin Blighe ♦ 61k
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Training and Testing datasets classification?
gene R software error written 1 day ago by prithvi.mastermind • 0
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In enrichGO, BP subontology doesn't work, but CC ontology does?
R gene ontology clusterprofiler written 1 day ago by cthangav • 0
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R: Problems during vcf to genind to genclone conversion
R poppr genind genclone written 1 day ago by evolozzy • 10
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Job: Bioinformatics Postdoc Position, at Indian Institute of Technology (IIT) Madras
R job rna-seq snp postdoc written 2 days ago by nmanik • 0
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Enrichment analysis using Clusterprofiler R/Cytoscape
R cytoscape enrichment analysis clusterprofiler written 1 day ago by aarifdupharm • 0 • updated 1 day ago by Arup Ghosh ♦ 2.5k
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PureCN prepare environment error
software error R purecn written 10 days ago by cg_ref_database • 10 • updated 1 day ago by markus.riester • 490
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RStudio Pheatmap: sort DEG by logFC
R rna-seq written 2 days ago by chienjen113 • 0 • updated 1 day ago by caggtaagtat • 1.1k
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How to make complex contrasts in DiffBind dba.contrast
R diffbind tool dba.contrast written 23 days ago by Bioinformatist Newbie • 250 • updated 1 day ago by Rory Stark • 720
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perplexity value in t-sne algorithm
gene R rna-seq t-sne written 2.7 years ago by einatshu • 0 • updated 2 days ago by Renesh • 1.9k
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Job: Research Scientist in Biostatistics/Bioinformatics at UNC Charlotte, NC, USA (updated)
genomics statistics data science job R ngs written 2.0 years ago by bigmawen • 340
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Merge several bigWig files (with different intervals) into single GRanges object
R genomicfeatures gviz chip-seq rtracklayer written 2 days ago by Roman Hillje • 40 • updated 2 days ago by noshadho • 0
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Avoid repetition in script
plotting R snp manhattan plot cpg written 2 days ago by aroso491 • 0
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Obtaining gene expression data from GEO
geo R microarray written 2 days ago by silsie645 • 10 • updated 2 days ago by patelk26 • 120
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Convert Logp value to P value
R csv P snp logp written 2 days ago by devarora • 150 • updated 2 days ago by RamRS ♦ 27k
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How to get probe-specific intensity values including genomic positions from microarray ChIP-chip data?
R mapping microarray chip-chip written 3 days ago by Marcel • 0
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plotP from SPIA
R rna-seq written 2 days ago by bojkem91 • 0
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Grouping gene names programmatically
gene R written 2 days ago by hakon.kaspersen • 0 • updated 2 days ago by antonioggsousa • 480
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One sample Wilcoxon test for each boxplot ggplot2
R ggplot2 written 4 days ago by jordi.planells • 190
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Problem in LD-based SNP pruning using SNPRelate
R snp snprelate written 3 days ago by evelyn • 100 • updated 3 days ago by zx8754 ♦ 9.4k
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Pairwise wilcox test error
R written 3 days ago by celia.escher • 10 • updated 3 days ago by antonioggsousa • 480
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Ensembl ID mapping using Biomart
software error R rna-seq gene written 4 days ago by prithvi.mastermind • 0 • updated 4 days ago by Jean-Karim Heriche ♦ 22k
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Complex Heatmap - Reordering clusters using cluster information from second matrix
R complex heatmap heatmap written 4 days ago by janina_lueders • 0
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enhanced volcano plot
R enhancedvolcano rna-seq written 4 days ago by javanokendo • 0 • updated 4 days ago by zx8754 ♦ 9.4k
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Counting single-cell ATAC fragments at peaks on BED file
R atac-seq written 4 days ago by Nico • 0 • updated 4 days ago by geek_y ♦ 11k
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Tool to merge two GTFs
gtf R written 4 days ago by manninm • 0
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Spaces in chromosomes when plotting Manhattan plots
R manhattan qqman written 4 days ago by lamia_203 • 70 • updated 4 days ago by i.sudbery ♦ 8.2k
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