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<prev • 5,310 results • page 1 of 177 • next >
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535
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Making nice plots based on the different metrics from VCF file
genome R snp written 10 months ago by Denis • 120 • updated 5 hours ago by pwwang • 0
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47
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Job: Computational biologist / Bioinformatician I & II at University of Texas Southwestern Medical Center at Dallas
chip-seq job snp sequencing R rna-seq written 5 hours ago by chao.xing • 10
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35
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how to merge gvcf using bcftools
snp written 6 hours ago by evelyn • 30
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1
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78
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1
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Purines and pyrimidines in frame shift mutations
sequence snp sequencing written 3 days ago by 3335098459 • 10 • updated 10 hours ago by Cupton • 60
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1.4k
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SNPEff database building error
snp written 2.6 years ago by ntyagi654 • 0 • updated 13 hours ago by trinidadmartinc • 0
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71
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bedtools and SNPs for pyseer-GWAS analysis
genome gene snp written 21 hours ago by 3335098459 • 10 • updated 19 hours ago by ATpoint ♦ 24k
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34
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How to calculate the density of alternative alleles as a ratio in a window of 10 kb
snp written 20 hours ago by haneenih7 • 20
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1
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63
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1
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Best tool for variant calling in polyploids
genome assembly snp written 4 days ago by giannkas1 • 0 • updated 22 hours ago by harish • 230
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6
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8 follow
6
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how to count variants par sample per chromosome in a vcf file?
snp written 13 months ago by nagarsaggi • 0 • updated 1 day ago by chrchang523 ♦ 5.7k
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1
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83
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1
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PLINK BED format: how interpret 0, 1, 2
plink snp written 11 days ago by CaffeSospeso • 40 • updated 1 day ago by chrchang523 ♦ 5.7k
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67
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Whole genome Pn/Ps selection stats
sequencing alignment selection snp statistics written 2 days ago by sarah.goldstein • 0
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2
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99
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2
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Linux: move/copy same name files to one folder
sequence snp written 2 days ago by 3335098459 • 10 • updated 2 days ago by Pierre Lindenbaum ♦ 123k
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68
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Missing SNPs in sequencing.com from BAM file
missing bam snp sequencing written 2 days ago by imbiling • 0
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78
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Draw a heat map of linkage disequilibrium R^2s from 10,000 SNPs
R snp written 3 days ago by Huichen03 • 10
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0
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127
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gvcf error bcftools
snp written 4 days ago by evelyn • 30
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1
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128
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1
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non-SNP variants in a vcf merge file
snp written 10 days ago by evelyn • 30 • updated 4 days ago by Kevin Blighe ♦ 50k
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1
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70
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1
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MAF threshold in The Cancer Genome Atlas (TCGA) and Personal Genome Project (PGP)
snp written 10 days ago by fatmasayed93 • 0 • updated 4 days ago by Kevin Blighe ♦ 50k
4
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1
answer
162
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1
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Missing SNP in gnomAD hg38 liftover vcfs
gnomad snp written 6 weeks ago by Nicolas Rosewick ♦ 8.3k
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1
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114
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1
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Do you recommend any platform that I can use instead of an HPC?
variant analysis snp rna-seq written 5 days ago by ferro.d.bio • 10 • updated 5 days ago by Brice Sarver • 3.1k
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1
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60
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1
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Not enough SNPs after filtering an imputed dataset
snp impute filtering qctool variants written 5 days ago by Max • 10
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48
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0
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Annotating sc-eQTLGen with ref/alt allele and allele frequency
R dbsnp snp annotation written 5 days ago by stryars • 0
1
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40
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0
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vcftools minDP filter not working for samtools genotype calling output
genotype filtering snp snp-calling written 5 days ago by Jautis • 280
1
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68
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0
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Plink --score generates different output for same dataset
software error gene next-gen snp written 7 days ago by ian15brown • 0 • updated 6 days ago by zx8754 ♦ 8.3k
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101
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How rare are somatic mutations?
varscan tumor mutect snp somatic written 7 days ago by syntax • 50
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1
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5 follow
1
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What is the -nct alternative in GATK 4.0.0.0?
snp written 17 months ago by mostafarafiepour • 60 • updated 7 days ago by raf.marcondes • 20
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62
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Phased genotype hapmap3 data encoded as 0 1.
gwas snp hapmap3 written 7 days ago by nastasia • 0
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1
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71
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1
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Allele discrepancy between Database and Publication
ensembl dbsnp genotype snp written 7 days ago by snp_guy • 0 • updated 7 days ago by Emily_Ensembl ♦ 19k
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75
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Functional part of truncated genes
genome gene alignment snp assembly written 7 days ago by 3335098459 • 10
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96
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Separate SNP common
snp written 8 days ago by kasiriyan.m.m • 0
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103
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Output bigger than input. VCFtools
software error snp written 10 days ago by victor.agrs • 0
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