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<prev • 3,337 results • page 1 of 112 • next >
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LD, LD-decay and Correlation Coefficients of SNP loci
R snp written 6 days ago by mysisayk • 0 • updated 7 hours ago by aays • 0
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Filtering SNPs in LD or that fail HW equilibrium test
next-gen snp written 7 hours ago by qlouredo • 0
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2
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Obtain the LD matrix from a list of SNP
snp ld written 5 days ago by janhuang.cn • 10 • updated 8 hours ago by aays • 0
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107
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How Add data in ref column in vcf file
genome vcf vcftools snp written 4 days ago by misbahabas • 30 • updated 8 hours ago by aays • 0
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why would tped file from command plink --bfile [extenstion] --recode --tranpose have strange outputs?
genome R genabel plink snp written 4 months ago by yoelsanchez06 • 0 • updated 23 hours ago by alejandrotola • 0
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copy number variation as a covariate in MatrixEQTL
gene R snp written 1 day ago by mms140130 • 50
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101
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5 follow
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What makes assigning A/T and G/C SNPs to a strand unreliable if MAF is not near 0.5?
a/t g/c snp strand written 2 days ago by Vincent Laufer • 860
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118
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vcf-consensus wrong bases
vcf fasta snp written 1 day ago by samuel.lipworth • 10
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112
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Fdist2 via Arlequin
genome lositan selection snp arlequin written 3 days ago by remi.b.md • 60 • updated 1 day ago by h.mon ♦ 7.3k
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66
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Lofreq Error For SNP calling
rna-seq snp written 2 days ago by bandanaschapagain • 10
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142
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unable to download file from plant ensembl
ensembl snp written 27 days ago by Medhat • 6.7k • updated 2 days ago by Emily_Ensembl ♦ 12k
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Annotate SNV (or breakpoint) data
genome R snp written 2 days ago by fugu • 30
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How to convert SNP genotyping excel file to .MEGA file format
snp written 12 months ago by blacktomato27 • 0 • updated 2 days ago by caroline.pont • 0
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Difference of CN probes and SNP probes on genotyping microchip arrays
array affymetrix snp cnv written 4 days ago by Jimbou • 560 • updated 3 days ago by Biostar ♦♦ 20
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Forum: SNP annotation and Candidate gene identification using different but closely related species?
assembly genome forum snp sequencing gene written 3 days ago by vetriventhan • 0
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101
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Cis- eQTL Question
gene snp written 3 days ago by mms140130 • 50 • updated 3 days ago by andrew.j.skelton73 • 3.5k
2
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1
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116
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1
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How can I interpret linkage analysis result from plink?
chip-seq snp written 3 days ago by Sharon • 0 • updated 3 days ago by WouterDeCoster ♦ 20k
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89
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software for multiple phenotype-to-genotype associations
phenotype association snp written 3 days ago by harold.smith.tarheel • 3.7k
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104
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how to extract gene name for non-synonymous SNPs from annotated vcf file for GO analysis
non-synonymous snp go written 4 days ago by reza • 140
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119
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Comparing Allele Frequency
comparison plink snp written 4 days ago by seanlishengyu • 0
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109
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1
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GATK variantFiltration unexpected behaviour?
gatk variant filtration snp written 4 days ago by jtwalker • 10
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3
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167
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5 follow
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Extract nucleotides from fasta file by a single position
genome sequence snp written 4 days ago by misbahabas • 30 • updated 4 days ago by st.ph.n • 990
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81
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snpEff 'WARNING_REF_DOES_NOT_MATCH_GENOME' during hg38 annotation
snp written 4 days ago by spiral01 • 60
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88
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Allele frequency calculation for genotype dosage value
snp written 5 days ago by drsachinbioinfo • 0
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1
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97
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1
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extract groups of SnPs and store them in separate files
snp subsetting written 5 days ago by Ana • 10
2
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1
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127
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1
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Software to in silico test restriction enzymes for GBS sequencing and similar approaches
genome next-gen snp sequencing written 5 days ago by Denis • 30 • updated 5 days ago by h.mon ♦ 7.3k
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88
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SNP count per gene, without disease mutations and observation bias
snp written 5 days ago by Suicyte • 0
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121
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Intronic Variant Filtering
intron snp variantcalling written 5 days ago by cvu • 90 • updated 5 days ago by Samuel Brady • 190
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119
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simple polygenic risk example
polygenic risk snp written 24 days ago by nkinney06 • 20 • updated 5 days ago by Biostar ♦♦ 20
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102
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How to convert VCF to BED without BEDOPS
software error vcf snp written 5 days ago by charles.kronk • 0
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