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SNP subsetting using bcftools
next-gen bcftools snp written 2 hours ago by alexcullsci • 0 • updated 1 hour ago by Kevin Blighe ♦ 56k
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1
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Does the GENOtation web-based PCA tool work?
wgs pca genotation snp stanford written 1 day ago by omg what am I doing • 60 • updated 3 hours ago by Kevin Blighe ♦ 56k
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freebayes for snp call in pooled samples: how do I set the parameters?
pooled ploidy freebayes snp written 5 hours ago by cristiana.ij.marques • 0
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Visualisation of SNPcoverage genomewide
software snp written 1 day ago by steinfried12 • 0 • updated 1 day ago by RamRS ♦ 26k
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VCF comparison: shared variants
genome snp sequencing written 6 weeks ago by deniselavezzari • 0 • updated 1 day ago by Biostar ♦♦ 20
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52
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How to extract intervals for regions that are masked?
assembly snp sequencing written 1 day ago by serpalma.v • 30
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1
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59
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1
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what does ./1 in a VCF file means
vcf genome sequence snp written 1 day ago by raalsuwaidi • 0 • updated 1 day ago by bruce.moran • 680
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Sliding window analysis for angsd output
sliding window next-gen dxy angsd snp written 1 day ago by wumy • 0
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1
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Error when changing the database for minfi dropLociWithSnps
methylationepic minfi illumina snp methylation written 2.7 years ago by Ellen O • 10 • updated 1 day ago by steffanchristiansen • 0
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Does bcftools distinguish between two gene copies on the bacterial genome ?
bacteria bcftools rna-seq snp written 1 day ago by praneeth.bommisetti • 0 • updated 1 day ago by genomax ♦ 80k
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71
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rs(number) of a SNP
snp written 2 days ago by fatma.mokhtar • 10
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56
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1
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How to use plink to consolidate multiple single-sample vcf files?
vcf plink snp genotyping written 2 days ago by kynnjo • 20
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40
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1
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GWAS data integration
gwas next-gen chip-seq snp written 2 days ago by ishtiaque.hossain • 0 • updated 2 days ago by Sam • 2.6k
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Filter out supplementary aligned reads for variant calling or not
freebayes bwa snp written 2 days ago by gb • 1.7k
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47
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Repeated measures in GWAS and polygenic risk scores analyses
snp written 3 days ago by rkl • 0
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5 follow
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GISTIC input parameters.
gistic snp cnv written 19 months ago by rin • 30 • updated 3 days ago by 2953531955 • 10
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dbVar Unique ID for varients
mutation api dbvar snp python written 11 months ago by Manu Madhavan • 20 • updated 4 days ago by Biostar ♦♦ 20
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2
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356
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2
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Phasing with SHAPEIT
shapeit impute plink snp written 3 months ago by melania 2282 • 70 • updated 4 days ago by officialoxybreath • 0
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1
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94
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1
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Reproduction eQTL GTex Box plot
eqtl snp written 5 days ago by 7441980 • 0
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1
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100
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1
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How convert a fastQ file to a Sam/Bam file
bam sam snp convert written 8 weeks ago by Adriel Rosa • 0 • updated 4 days ago by Biostar ♦♦ 20
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1
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Find particular SNPs affecting PCA
myposts pca snp snprelate written 4.2 years ago by lovestowell • 10 • updated 6 days ago by rturba07 • 0
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Removing GC dinucleotides from a sequence
gene alignment sequence snp written 8 days ago by spiral01 • 100
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75
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News: Population Genomics course online
R news next-gen snp written 8 days ago by carlopecoraro2 • 1.5k
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44
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Adding geneset to missMethyl
gene sequence snp written 8 days ago by solveigbrunstad • 0
1
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1
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107
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1
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Error in WGCNA packages installation in R?
software error R snp written 8 days ago by harshraje19 • 20
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1
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100
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1
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Visualising affymetrix and sequencing SNP calls
R next-gen snp written 12 days ago by robjohn70000 • 120 • updated 9 days ago by Kevin Blighe ♦ 56k
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1
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What is Left align and parsimonious (VCF normalisation) ?
genome next-gen sequence snp written 2.2 years ago by pinninti1991reddy • 50 • updated 9 days ago by bjwiley23 • 0
2
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1
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73
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1
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PLINK unable to read covariate file
gwas plink snp written 10 days ago by zichunxu0824 • 0 • updated 10 days ago by chrchang523 ♦ 6.7k
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102
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1
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Generating Neighbour Joining Tree from Sequences
genome sequence snp written 11 days ago by Fido • 20 • updated 10 days ago by lagartija • 80
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GATK's new best practice for mitochondrial variant calling
snp sequencing written 10 days ago by lovelysunzt • 0
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