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<prev • 5,067 results • page 1 of 169 • next >
0
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13
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how do you download a single SNP in vcf format?
snp written 23 minutes ago by doirerosie • 0 • updated 4 minutes ago by Ace • 30
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18
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FORMAT 'PL' is not defined in the header, assuming Type=String (bcftools)
vcf snp written 1 hour ago by goatsrunfaster • 0 • updated 1 hour ago by RamRS ♦ 22k
2
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4
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10k
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4
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.vcf to.csv conversion
R snp written 4.6 years ago by mattbawn • 40 • updated 5 hours ago by chantelmarshal321 • 0
2
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2
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80
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5 follow
2
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Replace the bases with N for the sites with evidence of a SNP
alignment snp written 3 days ago by Prakki Rama • 2.3k • updated 5 hours ago by chantelmarshal321 • 0
9
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0
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70
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5 follow
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How do I get a GFF file
snp written 5 hours ago by apl00028 • 70
1
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35
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0
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How do I merge plink files with different SNPs?
genome vcf plink snp written 10 hours ago by amber • 10 • updated 10 hours ago by zx8754 ♦ 7.5k
2
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1.3k
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Tool: MUTAFRAME - a web app for mutation effect prediction & visualization
proteomics visualization mutation tool snp written 2.2 years ago by Ibrahim Tanyalcin • 950
0
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0
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61
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0
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The pooled heterozygosity (Hp) score
vcf genome next-gen snp gene written 2 days ago by siyavash_damdar • 20
2
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1
answer
67
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1
answer
What's the meaning of the numbers in each column in the .txt file generated by snpEFF
gene snp written 2 days ago by weishang • 0 • updated 2 days ago by Pierre Lindenbaum ♦ 121k
2
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2
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80
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2
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Identifying unique SNPs between species
vcf alignment snp written 3 days ago by Wilber0x • 10 • updated 2 days ago by finswimmer ♦ 11k
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2
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454
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2
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Linkage disequilibrium after HapMap
linkage snp written 21 months ago by Kizuna • 780 • updated 3 days ago by Maki • 0
1
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1
answer
98
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1
answer
Merge VCF files with diploid reference calls in different order for same positions (e.g. TC vs CT)
vcf snp written 3 days ago by goatsrunfaster • 0 • updated 3 days ago by finswimmer ♦ 11k
1
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0
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55
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Empty VCF files produced by both Mutect2 and HaplotypeCaller?
snp rna-seq haplotype-caller mutect sequencing written 3 days ago by gprashant17 • 50
0
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0
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45
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0
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Axis error on R (R or treeWAS issue)
software error R snp written 3 days ago by Nerdobyte • 0
1
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0
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44
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0
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News: Course: Speciation Genomics in Canada - Quebec City, 2-6 September 2019
R news next-gen snp written 4 days ago by info • 40
7
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2
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2.0k
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5 follow
2
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Download full list of SNPs and their coordinates in hg38
hg38 dbsnp snp snpsnap population genetics written 13 months ago by gaelgarcia • 150 • updated 4 days ago by Shicheng Guo • 7.5k
0
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0
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124
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0
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Plot association between genotype and splicing ratio using ggplot
ggplot snp rna-seq written 5 days ago by waqaskhokhar999 • 40
2
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0
answers
121
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0
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Why am I getting fewer variants with more samples?
variant calling gatk snp written 5 days ago by Ace • 30
2
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3
answers
1.8k
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3
answers
Can someone help me with imputation of missing SNPs using beagle 4?
software error snp written 3.2 years ago by ericagoyi • 10 • updated 5 days ago by RamRS ♦ 22k
6
votes
3
answers
90
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3
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Numeric genotype to letters
snp written 5 days ago by waqaskhokhar999 • 40 • updated 5 days ago by JC ♦ 7.9k
0
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0
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52
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0
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How can i adjust the VAF values based on newly correctly estimated tumor purity
purity vaf snp written 6 days ago by sara.younes • 20
2
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1
answer
98
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1
answer
How should we merge the Chromosome and position columns of a vcf and or .map file to have the ID column without dots?
vcf plink snp written 6 days ago by jaafari.omid • 50 • updated 6 days ago by WouterDeCoster ♦ 39k
1
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0
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74
views
0
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PCA on pairwise allele sharing counts
pca snp written 6 days ago by devenvyas • 580
0
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0
answers
58
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0
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Converting Genotype Data to Structure Input Format
next-gen snp written 7 days ago by thomm80 • 0
0
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0
answers
81
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0
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Generate SNP/indel annotation
genome snp written 7 days ago by oussriradnane • 0
0
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1
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65
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1
answer
GATK Error Message: Invalid argument value 'RealignerTargetCreator at position' 0
vcf gatk snp written 7 days ago by hafiz.talhamalik • 70
0
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0
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96
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0
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Filter Variant in DNA repair genes
gene R snp written 7 days ago by melania 2282 • 0
1
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1
answer
78
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1
answer
What are the best tools for analyzing and identifying somatic mutations?
vcf bam snp rna-seq sam written 9 days ago by gprashant17 • 50 • updated 9 days ago by ATpoint ♦ 18k
2
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1
answer
723
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1
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How can I transform CNV output data of Agilent 244K to TCGA/GDC data?
agilent snp tcga cnv affymetrix written 2.1 years ago by titiro89 • 0 • updated 9 days ago by Biostar ♦♦ 20
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64
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Calculate the SNP effect on binding site and RNA fold for Bacteria
bacteria rna_fold binding_site snp written 10 days ago by damianosmel • 0
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