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109
votes
8
answers
41k
views
54 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 9.6 years ago by Matthieu460 • updated 4.7 years ago by alexisdereeper30
68
votes
7
answers
31k
views
38 follow
7
answers
Plotting Density Of Snps On Chromosomes
snp plot written 8.7 years ago by Leszek4.1k • updated 3.3 years ago by kaixian1100
54
votes
4
answers
37k
views
32 follow
4
answers
Filtering Vcf File
vcf indel vcftools snp written 8.3 years ago by bioinfo790 • updated 3.1 years ago by DataFanatic270
30
votes
2
answers
7.4k
views
32 follow
2
answers
Best tool for variant calling
genome alignment next-gen snp written 2.5 years ago by williamsbrian5064290 • updated 2.0 years ago by claire0
96
votes
8
answers
26k
views
30 follow
8
answers
What Methods Do You Use For In/Del/Snp Calling?
short aligner snp sequencing written 10.7 years ago by Pierre Lindenbaum131k • updated 7.1 years ago by Biostar ♦♦ 20
59
votes
4
answers
36k
views
29 follow
4
answers
How To Analyze Imputed Gwas Data
gwas imputation plink snp R written 9.7 years ago by Stephen2.7k • updated 5 months ago by Mahan70
55
votes
6
answers
24k
views
27 follow
6
answers
Get rs number based on position
mysql snp ucsc written 9.5 years ago by Zach Stednick650 • updated 2.0 years ago by zx87549.7k
56
votes
4
answers
19k
views
26 follow
4
answers
How To Map A Snp To A Gene Around +/- 60Kb ?
data snp human annotation written 10.7 years ago by Khader Shameer18k • updated 10.7 years ago by Aaronquinlan11k
30
votes
6
answers
21k
views
26 follow
6
answers
Amino Acid Change To Genomic Location
amino-acids snp written 8.9 years ago by Preethi110 • updated 4.9 years ago by michael.d.mclellan150
39
votes
3
answers
10k
views
25 follow
3
answers
LD-decay in a r2 vs distance(cm) plot
R snp written 2.8 years ago by adele60 • updated 2.7 years ago by hewm200840
84
votes
8
answers
16k
views
24 follow
8
answers
Good Gwas Papers / Resources
gwas literature snp written 10.3 years ago by brentp23k • updated 10.3 years ago by Larry_Parnell16k
18
votes
6
answers
11k
views
22 follow
6
answers
Where Can I Download Vcf Files For Publicly Available Data?
vcf snp download written 9.0 years ago by Kevin640 • updated 6.5 years ago by e.cirillo89230
51
votes
3
answers
16k
views
22 follow
3
answers
1000 Genomes Snps' Ancestral Allele
1000genomes snp written 7.9 years ago by seaboy120
27
votes
3
answers
3.7k
views
22 follow
3
answers
How to get sample names and genotype for SNP in multi-sample VCF file
gatk genotype snp written 2.8 years ago by hellbio420 • updated 2.4 years ago by Pierre Lindenbaum131k
81
votes
5
answers
35k
views
21 follow
5
answers
Ti/Tv Ratio Confirms Snp Discovery. Is This A General Rule?
snp written 9.9 years ago by Yahan200 • updated 3 months ago by Biostar ♦♦ 20
97
votes
11
answers
22k
views
18 follow
11
answers
Disease Associated Snps
gwas database snp written 10.5 years ago by pixie@bioinfo1.4k • updated 6.9 years ago by vaibhav0
49
votes
7
answers
36k
views
18 follow
7
answers
How Can I Merge A Large Amount Of Vcf Files?
vcf merge vcftools snp written 8.4 years ago by Matt W240 • updated 2.4 years ago by ATpoint42k
31
votes
7
answers
9.2k
views
18 follow
7
answers
Variant Function Prediction
variant effect snp written 6.7 years ago by User 1933340 • updated 4.7 years ago by christopher medway450
31
votes
1
answer
14k
views
18 follow
1
answer
What are good settings for filtering VCF files?
samtools bcftools vcftools snp written 6.3 years ago by devenvyas650 • updated 6.3 years ago by Ashutosh Pandey12k
24
votes
0
answers
3.4k
views
18 follow
0
answers
65
votes
12
answers
14k
views
17 follow
12
answers
Mapping Snps To Pathways
pathway gene genotyping snp enrichment written 10.8 years ago by Pierre Lindenbaum131k • updated 12 weeks ago by Biostar ♦♦ 20
39
votes
6
answers
24k
views
17 follow
6
answers
Sift Or Polyphen
non mutation snp written 9.7 years ago by Dataminer2.7k • updated 12 months ago by always_learning1.1k
29
votes
3
answers
23k
views
17 follow
3
answers
How Can I Count Snps In My Vcf Files?
vcf snp awk written 8.4 years ago by Matt W240 • updated 5.2 years ago by ravi.uhdnis180
35
votes
5
answers
12k
views
16 follow
5
answers
Visualize Effect Of Snp Variant On Protein Structure
protein visualization structure snp written 10.5 years ago by Hanif Khalak1.2k • updated 3.7 years ago by GabrielMontenegro560
40
votes
6
answers
61k
views
16 follow
6
answers
Synonymous And Non-Synonymous Snps
non snp written 9.9 years ago by Elena240 • updated 5.8 years ago by HG1.1k
33
votes
4
answers
9.1k
views
16 follow
4
answers
36
votes
2
answers
22k
views
15 follow
2
answers
Homozygous Indel/Snp & Heterozygous Indel/Snp
snp written 7.2 years ago by always_learning1.1k • updated 3.4 years ago by ibseq120
40
votes
7
answers
9.5k
views
14 follow
7
answers
Eqtl Database Available?
gene database eqtl snp written 9.7 years ago by Krisr460 • updated 9.7 years ago by Argossy50
12
votes
3
answers
18k
views
14 follow
3
answers
How To Construct Phylogenetic Tree Using Snps
phylogenetics snp written 8.8 years ago by Zhu100 • updated 5.9 years ago by Biostar ♦♦ 20
34
votes
3
answers
22k
views
14 follow
3
answers
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