SomaticSniper Posts

A: SNP position in UTRs by finswimmer • 420
Hello, I'm a bit confused about the things you have tried to solve your task. This is what I wou...
C: Salmon/Sailfish for repeat element quantification? by Gema Sanz • 30
I solved it, the TE gtf file didn't contain info for class and family, I used the file TE hg19_rm...
C: Salmon/Sailfish for repeat element quantification? by Gema Sanz • 30
Hi, I'm trying to use you tool TEcount in my RNA-seq data using this code: TEcount -b file....
C: Improving existing assembly using PacBIo reads by Kevin Blighe • 1.2k
Okay, I would ask the person who created that tutorial, Roxane I believe, as she appears to have ...
C: Strand specific and unstranded dataset by Kevin Blighe • 1.2k
If you colour the samples by batch in PCA, you can visually inspect the bi-plot to see how differ...
A: Polish PacBio assembly with latest PacBio tools : an affordable solution for eve by bhagyathimmappa • 0
Hello, Thank you for the post. Do you have any idea about how to improve available assembly usin...
C: Improving existing assembly using PacBIo reads by bhagyathimmappa • 0
Thank you Kevin. Nice one, but it explains only about polishing, I want to know how to improve t...
C: match() function returning NA even when there is match by Kevin Blighe • 1.2k
No problem! I cannot be sure about the case sensitivity of the `getBM` function, but the other pa...
C: How to identify the important SNPs from several GWAS studies by geek_y ♦ 8.0k
Are you asking how reliable the published GWAS SNPs ?
A: how to compare 1st row and 1st column value with rest of the row values in R? by blacktomato27 • 10
Dear Both Cristian and Friederike Good Morning Thanks lot for your help and time spent to solve ...
C: Selecting genes that best separate between two groups by lirongrossmann • 10
Thanks! I work with DESeq2 too. Do you run the pca on the rlog output of DESeq2?
C: Strand specific and unstranded dataset by lirongrossmann • 10
Hi Again! I tried DEseq2 and I like it! My question is how did you know that the batch effect w...

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