SomaticSniper Posts

C: bash & quickGO to download gene symbols of a GO term by genomax ♦ 58k
There is definitely output in a web page (just try the URL standalone `http://www.ebi.ac.uk/Quick...
A: K-means With Many Clusters: Quick-TRANSfer steps exceeded by Ark • 60
I have been working with this some more and have come to the conclusion that this particular warn...
C: No mismatch allowed setting in Bowtie2 (-N 0 does not help) by Ankit • 30
It seems MAX,MIN is only shown in manual (`--mp MX,MN`). The downloaded bowtie2 version I have i...
C: DESeq2 and P values by Santosh Anand • 4.1k
Can you confirm you are plotting the raw pValue, and not the adjusted one (Padj)?
C: scRNA-seq, SEURAT, NormalizeData, ScaleData, PCA, CCA ... by igor ♦ 7.0k
I guess I (and the Seurat tutorial) did not explicitly mention the primary objective. Yes, the sc...
C: No mismatch allowed setting in Bowtie2 (-N 0 does not help) by Ankit • 30
Thanks for the reply. Mismatch penalty has MAX,MIN values. If I set MAX as 10000, what should be...
C: scRNA-seq, SEURAT, NormalizeData, ScaleData, PCA, CCA ... by Santosh Anand • 4.1k
Yes, your interpretation is true. The main purpose of scaling is to make data comparable across ...
C: SC RNA genes clustering by Santosh Anand • 4.1k
If you are working on scRNA data, it is highly recommended that you check Seurat PBMC tutorial ht...
C: Explaining PCA plots made from BigWig coverage files in DeepTools by a.rex • 170
what does this do? I don't understand what transpose does to the information?
C: How to compare kallisto and stringtie output by yusuf.zhc • 0
Thank you. it was helpful.
C: How to compare kallisto and stringtie output by yusuf.zhc • 0
Thank you. Should I cumulate transcript abundance into gene abundance and compare. as I need c...
C: Error in get(cdfname, object 'mm430mmentrezgcdf' not found by Santosh Anand • 4.1k
Why didn't you try the 10.0 CDF http://bioconductor.org/packages/2.1/data/annotation/html/mm430m...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 944 users visited in the last hour