SomaticSniper Posts

C: PRSice: Imputation and clumping by Rm ♦ 7.7k
PRSice has its google group for quick answers https://groups.google.com/forum/#!forum/prsice
C: Difference in FPKM values of lncRNA when using different annotation files by piyushjo • 20
Thanks Kevin and Grant. I am using stringtie to convert bams to gtf (that contain the fpkm and t...
C: A way to verify that GFF and Fasta files make a valid pair (came from the same p by Carambakaracho • 430
One additional note: You'll make your and your colleagues life easier in the future if you includ...
C: Difference in FPKM values of lncRNA when using different annotation files by Kevin Blighe ♦ 25k
To add to what Grant has said, which is perfectly valid, I have to state that FPKM should not be ...
C: Know if a pathway is being functionally activated or repressed by a group of up- by salamandra • 160
Thank very much. This is really useful
C: remove primer sequences from BAM file by WouterDeCoster ♦ 31k
An alternative solution would be to use the -L argument of GATK to specify variant calling to a c...
C: Chromosome lost after merge with vcf-merge by Kevin Blighe ♦ 25k
Great. I've moved my comment to an answer, to help others. To re-iterate: BCFtools should be used...
C: Using RepeatModeler for novel assembled genome by WouterDeCoster ♦ 31k
Hi nehleen11, Your question is not more urgent than any other question here and writing `Urgent`...
C: How to acknowledge in the paper a reference genome that hasn't been published ye by WouterDeCoster ♦ 31k
And a fourth option may be that the other group publishes their paper describing the new referenc...
C: Giga base or Giga byte by WouterDeCoster ♦ 31k
If an answer was helpful you should upvote it, if the answer resolved your question you should ma...
A: Difference in FPKM values of lncRNA when using different annotation files by grant.hovhannisyan • 980
IMHO, when you use only lncRNA annotations, your library size (total number of mapped reads overl...
C: Giga base or Giga byte by Shawrob400 • 0
thank you very much

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