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731 results • Page
1 of 15
Sort: Rank
Rank
Views
Votes
Replies
2
votes
1
reply
301
views
Tool:
TGSFilter, An ultra-fast and efficient tool for long reads filtering and trimming
genome-assembly
filtering
reads
trimming
updated 3 days ago by
Yingzi
• 0 • written 4 days ago by
Huiyang
▴ 180
0
votes
0
replies
191
views
Tool:
MicrobiomePhylo: A Comprehensive Platform for Advanced Microbiome Amplicon Sequencing Data Analysis and Visualization
microbiome
analysis
data
16S
4 days ago by
camillatafuro
• 0
82
votes
46
replies
8.3k
views
15 follow
Tool:
ChatGPT optimized for bioinformatics questions
gpt
updated 15 days ago by
LauferVA
4.1k • written 9 months ago by
Sasha
▴ 830
5
votes
2
replies
2.5k
views
Tool:
Coovar: Co-Occurring Variant Analyzer
snp
variant-annotation
updated 21 days ago by
GenoMax
140k • written 11.4 years ago by
Christian
★ 3.0k
1
vote
4
replies
355
views
Tool:
A c library for reading and writing sequences in fasta and fastq format.
seqio
22 days ago by
dwpeng
• 0
1
vote
0
replies
216
views
Tool:
HFKReads, an ultra-fast and efficient tool for high frequency kmer sequencing reads extraction
kmer
organelle
metagenomic
assembly
4 weeks ago by
Huiyang
▴ 180
0
votes
0
replies
240
views
Tool:
Microbiome Analysis: Comprehensive 16S Meta-barcoding Analysis in R with Phyloseq - On Sale Now!
R
microbiome
16S
phyloseq
analysis
26 days ago by
camillatafuro
• 0
0
votes
0
replies
148
views
Tool:
Annotating the epitope-specificity of TCRs with bioinformatics
Annotation
TCR
Epitope-specificity
6 weeks ago by
tim
• 0
10
votes
12
replies
1.6k
views
Tool:
PanDepth, an ultra-fast and efficient genomic tool for coverage calculation
bam
paf
depth
cram
coverage
6 weeks ago by
Huiyang
▴ 180
1
vote
0
replies
194
views
Tool:
gxf2bed: A high-performance GTF/GFF-to-BED converter written in Rust
convert
gff
gtf
bed
7 weeks ago by
alejandrogzi
▴ 120
3
votes
8
replies
597
views
Tool:
Generate unit-tested, ready-to-run pipelines using natural language prompting
NGS
pipeline
genomics
cloud
AI
updated 7 weeks ago by
Ram
43k • written 7 weeks ago by
Kevin
▴ 50
3
votes
0
replies
167
views
Tool:
GW: fast genome browser and variant exploration tool
genome
genomics
variant-annotation
genome-browser
visualization
8 weeks ago by
clealk
▴ 50
1
vote
0
replies
190
views
Tool:
BIRCH3.90 - BioLegato, Apple Silicon, Updates
genomics
sequence
transcriptomics
8 weeks ago by
brian.fristensky
▴ 460
0
votes
0
replies
169
views
Tool:
Get `BPCells` with Bioconductor workflow
single
cell
BPCells
9 weeks ago by
Yun
• 0
1
vote
3
replies
598
views
Tool:
retroSeeker: discovering a large set of retrotransposons in humans and any species
Mobile-element
Evolution
Retrotransposon
10 weeks ago by
lsp03yjh
▴ 860
1
vote
0
replies
233
views
Tool:
tinybio in OpenAI App Store
gpt
11 weeks ago by
Sasha
▴ 830
0
votes
0
replies
839
views
Tool:
What do you think about Tfinder? a tool to find individual motifs in DNA sequence. Help us ameliorate
Motifs
Transcription-factor
updated 3 months ago by
Ram
43k • written 3 months ago by
Naima
• 0
0
votes
2
replies
340
views
Tool:
Dot_plot_like_in_BLAST, a standalone tool for making dot plots similar to what online BLAST makes
Megablast
Blastn
dot
plot
dotplot
BLAST
updated 3 months ago by
Ram
43k • written 3 months ago by
shelkmike
★ 1.2k
1
vote
0
replies
225
views
Tool:
De Novo assembler (in C, supports MPI parallelism) available for experimenting with
de-novo
trie
olc
updated 3 months ago by
Ram
43k • written 3 months ago by
Graham
▴ 10
4
votes
0
replies
423
views
Tool:
NOEL: An extremely fast Non-Overlapping Exon Length calculator written in Rust
gene-annotation
exon-length
3 months ago by
alejandrogzi
▴ 120
9
votes
4
replies
2.2k
views
Tool:
SEDA (SEquence DAtaset builder): a desktop tool for processing FASTA files containing DNA and protein sequences
fasta
sequences
java
4 months ago by
Hugo
▴ 380
0
votes
0
replies
521
views
Tool:
deepBreaks: a machine learning tool for identifying and prioritizing genotype-phenotype associations
python
genetics
updated 4 months ago by
Ram
43k • written 4 months ago by
Mahdi
• 0
1
vote
1
reply
366
views
Tool:
Coremine Medical Introduction - connect - discover - share | explore and visualize associations
drug-target
drug
gene
updated 4 months ago by
Ram
43k • written 4 months ago by
Coremine Medical
▴ 20
0
votes
0
replies
222
views
Tool:
massSight: A tool to combine LC-MS datasets
qc
metabolomics
omics
R
lc-ms
4 months ago by
Chiraag
• 0
0
votes
0
replies
261
views
Tool:
Coremine Medical used in study to discover differentially expressed genes in multiple sclerosis
drugs
drug-targets
genes
4 months ago by
Coremine Medical
▴ 20
0
votes
0
replies
290
views
Tool:
Introducing SpectraView - a tool to transform your literature reviews!
gene
protein
drug-discovery
updated 5 months ago by
Ram
43k • written 5 months ago by
DrugDiscoveryTech
• 0
4
votes
0
replies
340
views
Tool:
MyBrain-Seq: A Pipeline for MiRNA-Seq Data Analysis in Neuropsychiatric Disorders
mybrain-seq
miRNA-seq
pipeline
neuropsychiatry
docker
5 months ago by
dannyzimm
▴ 50
12
votes
4
replies
992
views
Tool:
BBTools 39.03 released!
BBTools
BBMap
5 months ago by
Brian Bushnell
20k
2
votes
2
replies
554
views
Tool:
Python and R without installing apps
Resources
updated 6 months ago by
jena
▴ 290 • written 6 months ago by
gallardodiazmiriam
▴ 20
0
votes
0
replies
274
views
Tool:
MTMCSKAT package for GWAS with efficient resampling, parallelization
SKAT
MTMC-SKAT
updated 6 months ago by
Ram
43k • written 6 months ago by
michael.nagle
▴ 100
11
votes
2
replies
737
views
Tool:
Pipeline Generator
gpt
updated 7 months ago by
LauferVA
4.1k • written 7 months ago by
Sasha
▴ 830
13
votes
6
replies
5.1k
views
Tool:
csvtk - a cross-platform, efficient, practical and pretty CSV/TSV toolkit
CSV
Golang
TSV
7 months ago by
shenwei356
8.4k
3
votes
1
reply
714
views
Tool:
pyGenomeViz - A genome visualization python package for comparative genomics
genome
comparative-genomics
python
microbial-genomics
visualization
updated 10 weeks ago by
n.s.j.vandervelden
▴ 90 • written 7 months ago by
moshi
▴ 150
9
votes
9
replies
4.4k
views
Tool:
pyCirclize - Circular visualization in Python
visualization
circos
matplotlib
genome
python
updated 7 months ago by
shuo
• 0 • written 15 months ago by
moshi
▴ 150
0
votes
2
replies
6.9k
views
Tool:
The script to install the required packages for gene expression analysis using DESeq2 for downstream analysis and visualization
R
RNAseq
installation
DESeq2
7 months ago by
Aditya naman
• 0
1
vote
0
replies
539
views
Tool:
Create realistic VCF genomic data in just a few lines of Python code
genomic
linkage
python
vcf
tool
disequilibrium
7 months ago by
Rémy
▴ 10
1
vote
2
replies
3.5k
views
Tool:
How Study Aromatic-Aromatic Interactions And Amino-Aromatic Interactions Of Protein-Ligands Complexes In The Pdb.
pdb
updated 8 months ago by
Jiyao Wang
▴ 370 • written 10.4 years ago by
bagaruwa
• 0
3
votes
2
replies
717
views
Tool:
Launched: Genozip 15 with co-compression of BAM and FASTQ
BAM
CRAM
compression
FASTQ
updated 9 months ago by
DBScan
▴ 300 • written 9 months ago by
Divon
▴ 230
0
votes
1
reply
474
views
Tool:
tinybio added sources & chat history - (ChatGPT optimized for bioinformatics questions)
gpt
updated 5 days ago by
Shaunak
• 0 • written 9 months ago by
Sasha
▴ 830
7
votes
4
replies
2.8k
views
Tool:
TreeView3 - An update to java TreeView
TreeView3
java
updated 7 months ago by
nach.mcnach
▴ 10 • written 5.7 years ago by
rleach
▴ 180
0
votes
0
replies
349
views
Tool:
Unleashing the Power of Custom NGS Software for Cutting-Edge Research
DNAseq
pipeline
bisulfiteSeq
RNAseq
updated 9 months ago by
rpolicastro
13k • written 9 months ago by
David Langenberger
11k
5
votes
3
replies
812
views
Tool:
Experiment Generator
gpt
updated 9 months ago by
LauferVA
4.1k • written 9 months ago by
Sasha
▴ 830
0
votes
0
replies
473
views
Tool:
Easy API For Running Bioinformatics Jobs Via Python In The Cloud
api
execution
10 months ago by
Sasha
▴ 830
0
votes
0
replies
439
views
Tool:
Single-cell RNA-seq data analysis tool Cellenics®
single-cell
RNA-seq
scRNA-seq
updated 10 months ago by
Ram
43k • written 10 months ago by
Anastasija
• 0
0
votes
1
reply
950
views
Tool:
web app for user-friendly analysis of 16S rRNA gene meta-barcoding NGS data - bacterial microbiome
qiime2
16s
microbiome
ngs
updated 10 months ago by
Ram
43k • written 10 months ago by
camillatafuro
• 0
1
vote
2
replies
819
views
Tool:
Tinybio Slackbot - a large language model slackbot for bioinformatics
qa
10 months ago by
Sasha
▴ 830
0
votes
0
replies
429
views
Tool:
shinyCircos-V2.0: leveraging the creation of Circos plot with enhanced usability and advanced features
shinyCircos
visualization
Circular
Circos
genome
10 months ago by
Andrewoods
▴ 110
362
votes
82
replies
143k
views
35 follow
Tool:
Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
parallel
next-gen
ngs
updated 2 days ago by
jena
▴ 290 • written 11.1 years ago by
ole.tange
★ 4.4k
0
votes
0
replies
3.3k
views
Tool:
euka: Robust detection of eukaryotic taxa from modern and ancient environmental DNA using pangenomic reference graphs.
pangenomics
vg
sedaDNA
graph
environmental-DNA
updated 11 months ago by
Ram
43k • written 11 months ago by
Nicola
▴ 10
0
votes
1
reply
409
views
Tool:
TRcaller : a novel Tool for SSR /STR/TR genotyping from NGS data for short and long reads
SSR
NGS
genotype
STR
updated 11 months ago by
Ram
43k • written 11 months ago by
Xuewen
• 0
731 results • Page
1 of 15
Recent Votes
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Recent Locations •
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Recent Awards •
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Teacher
to
Pierre Lindenbaum
160k
Popular Question
to
brian.fristensky
▴ 460
Popular Question
to
Ann
★ 2.4k
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to
GenoMax
140k
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Devon Ryan
104k
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amitpande74
▴ 20
Popular Question
to
beacamara
• 0
Recent Replies
Comment: vcf file: number of samples does not match number of columns
by
Pierre Lindenbaum
160k
> ore or have any suggestions for fixing it? it's a problem with your upstream process. You'd better fix it.
Comment: Error in openning FastQC
by
friszd
• 0
after running fastqc -o output.html input.fastq, terminal returns: " Specified output directory 'output.html' does not exist " , when i run…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
The question you should be looking into is why the Q scores are dropping there? Are there `N` calls indicating some issue with that cycle?
Comment: Error in openning FastQC
by
GenoMax
140k
What is `ctrl+c ctrl+v`? You may actually be killing the running fastqc process. If you run `fastqc` interactively (like what was shown ab…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Dave Carlson
★ 1.7k
Ugh. I've definitely done this one before as well. And was none too happy about it.
Comment: Error in openning FastQC
by
friszd
• 0
fastqc -o output.html input.fastq ctrl+c ctrl+v
Comment: Error running local blastn in R using system2
by
GenoMax
140k
What do you see if you `cat nt_euk.nal`? Do the number of pieces mentioned in that file match with what you locally have?
Comment: Low number of both surviving reads after trimming
by
GenoMax
140k
It is your data and if you want to do that it is up to you. You may be throwing away essentially good data (you should remove the nextera s…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Istvan Albert
100k
Some things never change ... the most common mistake is still the one on top there
Comment: Low number of both surviving reads after trimming
by
Ram
43k
I see that the code content was not added again, just the formatting modified. The output is still mangled. Compare it to the output you se…
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Mensur Dlakic
★ 26k
I was trying to avoid re-living traumatic events, but here goes. This is an attempt to delete all the files with a certain extension but in…
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your response. There was no particular reason of `LEADING:20 and TRAILING:20`, but I used the same parameters as I had used …
Comment: Low number of both surviving reads after trimming
by
GenoMax
140k
A significant fraction of your reads appear to have the nextera sequence, that combined to this directive `LEADING:20` (do you have a reaso…
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Here is my fastqc, especially adapter content graph, before trimming(R1 and R2): ![enter image description here][1] And this after trimm…
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thanks, I modified.
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