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182 results • Page
2 of 4
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7
votes
3
replies
2.4k
views
Tutorial:
Automated dbSNP lookup by rsID position, plus genome build liftover
rsid
hg19
liftover
hg38
dbsnp
updated 11 months ago by
Randy H
▴ 110 • written 19 months ago by
Kevin Blighe
87k
11
votes
3
replies
1.4k
views
Tutorial:
Creating great documentation for bioinformatics software
Software-Documentation
updated 11 months ago by
Ram
43k • written 7.7 years ago by
venu
7.1k
2
votes
3
replies
473
views
Tutorial:
Bulk RNA-seq: Different Expression Analysis with DEseq2
python
pyDESeq2
RNA-seq
updated 10 weeks ago by
Ram
43k • written 11 weeks ago by
Julia Ma
▴ 120
44
votes
3
replies
13k
views
Tutorial:
A Wet-Lab Guide to 'what I wish I had known' for Computational Biology
bioinformatics
computational-biology
updated 11 months ago by
Ram
43k • written 8.0 years ago by
Sinji
★ 3.2k
1
vote
3
replies
3.2k
views
Tutorial:
resolving error of sspace_standard
software-error
Assembly
updated 11 months ago by
Ram
43k • written 7.6 years ago by
reza
▴ 300
15
votes
3
replies
4.6k
views
Tutorial:
NCBI blast tutorial
ncbi
blast
updated 11 months ago by
Ram
43k • written 7.9 years ago by
Eric Normandeau
11k
0
votes
3
replies
52k
views
Tutorial:
Installation VMD on LINUX_64
gromacs
VMD
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Hassan Rasouli
▴ 10
3
votes
3
replies
1.1k
views
Tutorial:
multi-omics data integration: a case study with transcriptomics and genomics mutation data
mutation
RNAseq
multiomics
updated 12 weeks ago by
sil_bioinfo
▴ 40 • written 7 months ago by
Ming Tommy Tang
★ 3.9k
2
votes
3
replies
2.7k
views
Tutorial:
It's about the journey, and not the destination
R
network
updated 10 months ago by
Ram
43k • written 7.0 years ago by
theobroma22
★ 1.2k
3
votes
3
replies
8.7k
views
Tutorial:
High Speed Downloading of SRA, SAM and Fastq Files
fastq
sam
Aspera-Connect
sra
updated 10 months ago by
Ram
43k • written 6.3 years ago by
Wenhu_Cao
▴ 100
5
votes
2
replies
1.6k
views
Tutorial:
ENCODE 2016: Research Applications and Users Meeting
ChIP-Seq
next-gen
ENCODE
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Ar
★ 1.1k
20
votes
2
replies
8.0k
views
Tutorial:
Creating a karyotype plot with genes using karyoploteR
karyoploteR
visualization
R
genome
updated 10 months ago by
Ram
43k • written 6.4 years ago by
bernatgel
★ 3.4k
14
votes
2
replies
6.4k
views
Tutorial:
ChIP-seq analysis tutorial
ChIP-Seq
updated 12 months ago by
Ram
43k • written 8.6 years ago by
Ming Tommy Tang
★ 3.9k
6
votes
2
replies
4.9k
views
Tutorial:
Yes .. BBMap can do that! - Part III clumpify (mark (and dedupe) duplicates without alignment), mutate (create mutant genomes) and other miscellaneou…
bbmap
3 months ago by
GenoMax
140k
1
vote
2
replies
1.5k
views
Tutorial:
ViennaRNA package installation in Windows
windows
rna
mfold
viennarna
updated 9 months ago by
Ram
43k • written 18 months ago by
Sandhiya
▴ 20
3
votes
2
replies
8.7k
views
Tutorial:
Use fastp to preprocess FASTQ data with unique molecular identifer (UMI) integrated
FASTQ
UMI
fastp
updated 10 months ago by
Ram
43k • written 6.3 years ago by
chen
★ 2.5k
14
votes
2
replies
2.4k
views
Tutorial:
Exploring OpenSNP - an RMarkdown report on crowdsourced genotypes and phenotypes
SNP
R
updated 11 months ago by
Ram
43k • written 8.0 years ago by
Jeremy Leipzig
22k
6
votes
2
replies
3.9k
views
Tutorial:
How to extract fastq files from SRA data that contains both paired and unpaired reads
fastq-dump
sra
updated 11 months ago by
Ram
43k • written 8.0 years ago by
thomaskuilman
▴ 840
10
votes
2
replies
3.7k
views
Tutorial:
Graph visualization with igraph in R
Visualization
igraph
Graph
R
Network
updated 10 months ago by
Ram
43k • written 7.0 years ago by
Jean-Karim Heriche
27k
6
votes
2
replies
4.1k
views
Tutorial:
GATK method for filtering vcf lines using GT values at all or multisample level.
genome
vcf
genotype
variant-filtration
updated 10 months ago by
Ram
43k • written 6.8 years ago by
kirannbishwa01
★ 1.6k
18
votes
2
replies
5.9k
views
Tutorial:
Update kraken databases
database
kraken
k-mer
python
updated 10 months ago by
Ram
43k • written 6.9 years ago by
Sej Modha
5.3k
3
votes
2
replies
2.6k
views
Tutorial:
Continuing Education (Pipelines): Best blogs, Online Lectures, Workshops, etc..
conferences
Workshops
updated 10 months ago by
Ram
43k • written 6.9 years ago by
jnowacki
▴ 100
7
votes
2
replies
2.4k
views
Tutorial:
Prediction of Ribosomal RNA Genes Using RNAmmer Software
Annotation
rRNA
RNAmmer
Genome
8 months ago by
Dr.Animo
▴ 110
19
votes
2
replies
3.4k
views
Tutorial:
Beginner's Handbook to Next Generation Sequencing
NGS
updated 10 months ago by
Ram
43k • written 7.0 years ago by
support
▴ 640
3
votes
2
replies
451
views
Tutorial:
Single-cell RNA-seq: Preprocessing: Data integration and batch correction-2
scRNA-seq
updated 10 weeks ago by
ATpoint
81k • written 10 weeks ago by
Julia Ma
▴ 120
3
votes
2
replies
3.8k
views
Tutorial:
Galaxy Tutorial on ChIP-seq
galaxy
ChIP-Seq
updated 10 months ago by
Ram
43k • written 7.0 years ago by
anton
▴ 30
0
votes
2
replies
2.4k
views
Tutorial:
COURSE: NGS variant analysis and interpretation for translational research
CNIO
course
translational
updated 11 months ago by
Ram
43k • written 7.6 years ago by
Folder40g
▴ 190
6
votes
2
replies
1.0k
views
Tutorial:
Updated List of Unix tutorials 2023
Unix
updated 7 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.4k
1
vote
2
replies
847
views
Tutorial:
How to ask computational biology questions
computational-biology
updated 9 months ago by
Ram
43k • written 9 months ago by
Ming Tommy Tang
★ 3.9k
22
votes
2
replies
6.0k
views
Tutorial:
Use a workflow management tool to manage your computational pipelines
workflow-management
snakemake
pipeline
updated 11 months ago by
Ram
43k • written 7.4 years ago by
Eric Lim
★ 2.1k
7
votes
2
replies
1.9k
views
Tutorial:
Introduction to Human Genomics for Clinical Informaticists
genome
updated 10 months ago by
Ram
43k • written 6.6 years ago by
bdolin
▴ 90
4
votes
2
replies
2.8k
views
Tutorial:
Building mosdepth on macOS
nim
mosdepth
updated 6 months ago by
GenoMax
140k • written 3.9 years ago by
ATpoint
81k
5
votes
2
replies
3.1k
views
Tutorial:
Get GC Content from UCSC with perl script (mysql)
myql
ucsc
gc-content
perl
updated 10 months ago by
Ram
43k • written 7.0 years ago by
Shicheng Guo
★ 9.4k
4
votes
2
replies
1.0k
views
Tutorial:
How to use UCSC genome browser to check the transcription factor binding at your favorite gene
UCSC
transcription
factor
ChIP-seq
8 months ago by
Ming Tommy Tang
★ 3.9k
7
votes
2
replies
1.7k
views
Tutorial:
A tale of two heatmap function
clustering
heatmap
updated 11 months ago by
Ram
43k • written 7.5 years ago by
Ming Tommy Tang
★ 3.9k
9
votes
2
replies
5.4k
views
Tutorial:
From Data import to Normalization in Microarray Analysis using in R (Part I)
gene
R
updated 11 months ago by
Ram
43k • written 7.8 years ago by
majuang66
▴ 140
3
votes
1
reply
2.3k
views
Tutorial:
Convert bam files to fastq in numbers as indicated in samtools flagstat stats.
samtools
bam
alignment
fastq
sequence
updated 10 months ago by
Ram
43k • written 6.8 years ago by
kirannbishwa01
★ 1.6k
0
votes
1
reply
471
views
Tutorial:
Single-cell RNA-seq: Preprocessing: Preprocessing the data of scRNA-seq with omicverse-1
scRNA-seq
updated 10 weeks ago by
Ram
43k • written 11 weeks ago by
Julia Ma
▴ 120
6
votes
1
reply
374
views
Tutorial:
Bulk RNA-seq: Different Expression Analysis
differential-expression
RNA-seq
updated 10 weeks ago by
Ram
43k • written 11 weeks ago by
Julia Ma
▴ 120
1
vote
1
reply
1.8k
views
Tutorial:
Live webinar: Implications of Next Generation Sequencing in Molecular Diagnosis of Cancer on 28 Sep 2016
alignment
sequencing
genome
SNP
updated 11 months ago by
Ram
43k • written 7.6 years ago by
Genomics
▴ 70
3
votes
1
reply
3.3k
views
Tutorial:
Affymetrix HTA 2.0 id conversion
biomart
HTA
affymetrix
Affymetrix
2.0
updated 7 weeks ago by
MaxF
▴ 120 • written 2.7 years ago by
Kevin Blighe
87k
3
votes
1
reply
3.7k
views
Tutorial:
Importance of Array Quality Control - arrayQualityMetrics (PART I)
gene
R
updated 11 months ago by
Ram
43k • written 7.8 years ago by
majuang66
▴ 140
1
vote
1
reply
272
views
Tutorial:
Bulk RNA-seq: Protein-Protein interaction (PPI) analysis by String-db
STRING
ppi
updated 10 weeks ago by
Ram
43k • written 11 weeks ago by
Julia Ma
▴ 120
7
votes
1
reply
2.2k
views
Tutorial:
A gentle introduction to biogo
sequence
golang
biogo
updated 10 months ago by
Ram
43k • written 6.4 years ago by
Botond Sipos
★ 1.7k
15
votes
1
reply
3.2k
views
Tutorial:
Current Topics in Genome Analysis 2016 (collection of educational lectures)
genomics
training
lectures
workshop
updated 11 months ago by
Ram
43k • written 7.9 years ago by
Malachi Griffith
19k
0
votes
1
reply
3.1k
views
Tutorial:
Accessing sequences using batch entrez
genome
updated 10 months ago by
Ram
43k • written 6.4 years ago by
mawia.martha
• 0
0
votes
1
reply
1.9k
views
Tutorial:
Nonparametric Regression STATA 15
STATA-15
Nonparametric-Regression
STATA
updated 10 months ago by
Ram
43k • written 6.3 years ago by
helgasaraswati
▴ 10
15
votes
1
reply
7.1k
views
Tutorial:
A compilation of conversion tools for BED, SAM/BAM, psl, pslx, blast tabular and blast xml
psl
SAM
blast
BED
updated 10 months ago by
Ram
43k • written 6.4 years ago by
Joseph Hughes
★ 3.0k
4
votes
1
reply
1.8k
views
Tutorial:
One of the easy way to achieve read count and RPKM file
RNA-Seq
updated 10 months ago by
Ram
43k • written 6.6 years ago by
maleknias
▴ 40
0
votes
1
reply
246
views
Tutorial:
Single-cell RNA-seq: Annotation: Celltype auto annotation with MetaTiME
scRNA-seq
MetaTiME
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
Julia Ma
▴ 120
182 results • Page
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for hgnc and ensembl that can be done for transcript id for human to mouse ortholog its difficult to parse and map the exact version from g…
Comment: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of
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Take it from someone who has hosted both a successful and a failed research topic: these deadlines are unrealistic. I am guessing you are p…
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That error is on the server side, nothing to do with you, and is very common. Usually the fix is to try again in an hour, or to insert host…
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hello @colindaven , Did you find a suitable tool for this purpose please ? I'm dealing with fungal dataset
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Can you upload or post a link to the genbank file please?
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I usually perform biomaRt queries with their `getBM()` function where I list the input using `filter` and `values` option and my request in…
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Thank you for your response. I have often seen commands like dds <- estimateSizeFactors(dds) normalized_counts <- counts(dds, normalized=T…
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It's the case that there's no indication of multi-threading in the documentation. However, it made me wonder why the developers would restr…
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Bulk RNAseq from any sample is still considered a bulk sample. Running bulk RNA sequencing on a sample with any level of cell type/state c…
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Yikes. Well, this is from an Illumina MiniSeq. Sure, I will use alignment, but only to remove host reads. Then the remaining reads will go …
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140k
This is going to be tough to diagnose. Are you going to align to a reference? If so go ahead with the alignments to see if alignments turn …
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Thank you for replying. I have separated the reads with at least one N on them and they account for 0.2% of the total reads in the file (8'…
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The `-db data/nt_euk` switch means that in your current directory you have a subdirectory called `data`, and all the `nt_euk` files are in …
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Thank you for your opinion. I will try with lower LEADING and TRAILING bases. By the way, I tried to set `keepBothReads:true` through sear…
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