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proteins pathways disease research-design genes

1 day ago by Coremine Medical ▴ 10

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drug genes drug-targets

updated 2 days ago by Ram 39k • written 2 days ago by Coremine Medical ▴ 10

2 results • Page 1 of 1

Recent Votes

Answer: Decoding MM and ML tags in .SAM file

Dealing with nanopore fast5 files compressed with vbz

Answer: How to sort gff3 according to chromosome order?

Comment: Asking for feedback on a Python library for computing alignments

Answer: counts matrix should be numeric, currently it has mode: character when using a c

Comment: Plotting GO enrichment DATA

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Comment: Samtools index and sambamba-depth error? by jkbonfield ★ 1.0k

> sambamba-depth: All files must be coordinate-sorted Does this not answer your question? Your files must be sorted prior to indexing, or…

Answer: Reorder GO terms using R by Papyrus ★ 2.5k

To order things in `ggplot2`, you use factors and specify factor levels as the order. The key thing in your example is that you actually wa…

Answer: motis SSR by m.esmaeilpour ▴ 10

thank you so much. I analyzed fasta format of genome one species (i downloaded one genome file from NCBI for the specie) in MISA tool and I…

Comment: Asking for feedback on a Python library for computing alignments by Alexander ▴ 80

Glad to hear you, hope to see your submits on CAFA5 ) First it is quote from the author, not my. Second in my mind it is indeed small incov…

Comment: Asking for feedback on a Python library for computing alignments by Mensur Dlakic ★ 23k

Out of curiosity: why is 8 minutes a problem when the notebooks are allowed to run for 9 hours?

Comment: Is PanCan data microarray or rna-seq by survive • 0

So both arrays and rna-seq have been performed on the same samples?

Comment: Asking for feedback on a Python library for computing alignments by Alexander ▴ 80

Resolved: Bernhard Liebl (author of "pyalign") kindly provided a way to install it on Kaggle: https://www.kaggle.com/code/lieblb/pyalign-ex…

Comment: How do I calculate differential expression for RNA-seq values with the "limma" p by Mark ★ 1.2k

I would suggest reading the `limma` manual/user guide instead https://www.bioconductor.org/packages/release/bioc/html/limma.html

Comment: Reorder GO terms using R by Mark ★ 1.2k

Check the package `forcats` to manually reorder the GO terms https://forcats.tidyverse.org/reference/fct_relevel.html

Answer: motis SSR by Pierre Lindenbaum 154k

https://ai.tinybio.cloud/chat > AGC/CTG motif SSR refers to a Simple Sequence Repeat (SSR) with a repeating pattern of AGC and CTG nucle…

Comment: Plotting GO enrichment DATA by Pierre Lindenbaum 154k

how about your previous questions ? comment/validate them please. https://www.biostars.org/p/9561671/ https://www.biostars.org/p/9562339/

Comment: Visualizing several genomes/plasmids in a single figure by blur ▴ 270

Thank you, I was not aware of the bot It solved my problem :)

Comment: UCSC genome browser by Pierre Lindenbaum 154k

I can see a screenshot. What is the problem ? What should you see ? What is the content of the track config ?

Comment: Limma returned only positive logFC values by Gordon Smyth ★ 6.1k

No, the updated code is no more correct than your original code. Before you undertake any differential expression analysis, you need to ha…

Comment: Differences in GTF files hg19 and hg38 by heureuse • 0

Thank you. Noted

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