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Showing: abyss • reset
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3
votes
1
answer
312
views
1
answer
"brew install brewsci/bio/abyss" doesn't work - no formula
abyss written 4 months ago by zhaoh • 0 • updated 3 days ago by Shaun Jackman • 410
1
vote
1
answer
73
views
1
answer
Make error for abyss-PE with many libraries
assembly abyss written 4 days ago by ck178807 • 0 • updated 3 days ago by benv • 710
0
votes
0
answers
118
views
0
answers
ABySS min = 500 ; how to change it
de novo assembly abyss sequencing written 10 weeks ago by philousap10 • 0
1
vote
2
answers
808
views
2
answers
Bosst configure error
assembly abyss written 2.1 years ago by Andrey Yurchenko • 10 • updated 3 months ago by Biostar ♦♦ 20
0
votes
0
answers
164
views
0
answers
Comparing Assemblies and Breaking Inconsistent Contigs
genome quickmerge dbg2olc masurca abyss written 4 months ago by EarlyEvol • 0
0
votes
0
answers
239
views
0
answers
Abyss Error when running Collector
assembly abyss written 5 months ago by claire.morandin • 0 • updated 5 months ago by genomax ♦ 55k
2
votes
0
answers
821
views
0
answers
ABySS 1.9.0 error at bwa index step
assembly abyss written 2.2 years ago by cmstouthamer • 10 • updated 6 months ago by Biostar ♦♦ 20
0
votes
3
answers
1.3k
views
3
answers
abyss-pe reading files endlessly with se command added
assembly paired-end miseq abyss written 2.5 years ago by pepijn.kooij • 0 • updated 7 months ago by Biostar ♦♦ 20
3
votes
1
answer
324
views
1
answer
How does the memory requirements of abyss scale ?
assembly abyss written 8 months ago by lieven.sterck • 2.4k • updated 8 months ago by benv • 710
1
vote
1
answer
303
views
1
answer
Is the Abyss contig and scaffold phased?
genome assembly abyss written 8 months ago by wjar6718 • 0 • updated 8 months ago by benv • 710
2
votes
0
answers
554
views
0
answers
unrecognized error in the abyss assembly software
assembly abyss written 8 months ago by xuchuan • 0
4
votes
1
answer
1.1k
views
1
answer
Assembly with mate-pairs issue
assembly abyss mate-pairs written 2.5 years ago by lieven.sterck • 2.4k • updated 8 months ago by Shaun Jackman • 410
3
votes
1
answer
386
views
1
answer
SNP calling from a scaffold.fa file
fasta snp calling abyss written 9 months ago by shynilasanthi • 30 • updated 9 months ago by pfs • 250
0
votes
2
answers
442
views
2
answers
Can't find ABYSS-P after compiling
assembly abyss written 10 months ago by freuv • 20
1
vote
2
answers
573
views
2
answers
ERROR 127: ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory
assembly abyss written 10 months ago by freuv • 20
0
votes
0
answers
509
views
0
answers
Problem with Abyss 2.0
assembly abyss written 10 months ago by Pierre • 0
0
votes
0
answers
548
views
0
answers
ABySS and Velvet "number of contigs and contig length in pair-end and single-end datasets"
illumina ngs abyss velvet written 11 months ago by Abdul Rafay Khan • 880
0
votes
1
answer
515
views
1
answer
What happened after coverage.hist in Abyss?
assembly abyss written 12 months ago by wangzz.email • 0 • updated 12 months ago by Jean-Karim Heriche ♦ 16k
5
votes
1
answer
704
views
6 follow
1
answer
Running ABySS at k-mer > 97
k-mer abyss genome assembly written 13 months ago by Anand Rao • 160 • updated 13 months ago by benv • 710
4
votes
1
answer
757
views
7 follow
1
answer
ABySS run problems
de novo mpi abyss genome assembly written 13 months ago by Anand Rao • 160 • updated 13 months ago by benv • 710
3
votes
2
answers
815
views
2
answers
interpretation Abyss stats
assembly next-gen abyss written 13 months ago by milanlove • 0 • updated 13 months ago by benv • 710
2
votes
2
answers
467
views
2
answers
scaffolding with n= and N=
assembly abyss written 14 months ago by jdoyle30724 • 0
7
votes
1
answer
611
views
5 follow
1
answer
Rescaffolding a genome assembly?
abyss scaffolding written 15 months ago by cmdcolin • 870
3
votes
1
answer
449
views
1
answer
abyss fixmate error (but read IDs seem appropriate)
benvforthewin abyss written 15 months ago by jdoyle30724 • 0
5
votes
1
answer
704
views
1
answer
Reading single-end reads takes forever
abyss written 17 months ago by RoseString • 0 • updated 17 months ago by benv • 710
2
votes
1
answer
385
views
1
answer
Abyss path subprograms
abyss written 17 months ago by Damian Kao ♦ 15k • updated 17 months ago by benv • 710
3
votes
1
answer
853
views
1
answer
Abyss-fixmate: error: all reads are mateless
genome assembly abyss abyss-fixmate written 17 months ago by jozs2019 • 10 • updated 17 months ago by benv • 710
1
vote
1
answer
504
views
1
answer
Abyss-map complains 'missing arguments'
abyss written 17 months ago by RoseString • 0 • updated 17 months ago by benv • 710
0
votes
1
answer
649
views
1
answer
having trouble for running abyss-sealer as stand-alone application
assembly abyss written 22 months ago by xitla.aguirre • 0 • updated 17 months ago by xunshengbu • 0
2
votes
2
answers
716
views
2
answers
abyss-pe without openmpi
assembly abyss written 18 months ago by vinaykmittal • 10 • updated 18 months ago by benv • 710
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