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Showing: abyss • reset
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3
votes
1
answer
107
views
1
answer
Abyss genome assembly on several nodes
node abyss written 23 days ago by Igor Lalin • 0
1
vote
0
answers
174
views
0
answers
Abyss (Optimizing the parameter k)
assembly kmer abyss written 3 months ago by Mbillah • 110 • updated 10 weeks ago by Biostar ♦♦ 20
9
votes
1
answer
418
views
5 follow
1
answer
ABySS path setup for temporary files
assembly abyss written 3 months ago by Mbillah • 110 • updated 3 months ago by colindaven • 1.0k
0
votes
0
answers
181
views
0
answers
Abyss run time
assembly abyss written 3 months ago by Mbillah • 110
0
votes
1
answer
303
views
1
answer
Assembly with ABySS, Kmer optimisation
assembly kmer abyss written 4 months ago by lieven.sterck ♦ 3.9k
0
votes
0
answers
1.4k
views
0
answers
abyss fixmate error
abyss written 3.4 years ago by rebzi87 • 0 • updated 4 months ago by Biostar ♦♦ 20
3
votes
1
answer
556
views
1
answer
"brew install brewsci/bio/abyss" doesn't work - no formula
abyss written 9 months ago by zhaoh • 0 • updated 4 months ago by Shaun Jackman • 420
1
vote
1
answer
168
views
1
answer
Make error for abyss-PE with many libraries
assembly abyss written 5 months ago by ck178807 • 0 • updated 4 months ago by benv • 710
0
votes
0
answers
244
views
0
answers
ABySS min = 500 ; how to change it
de novo assembly abyss sequencing written 7 months ago by philousap10 • 0
1
vote
2
answers
971
views
2
answers
Bosst configure error
assembly abyss written 2.5 years ago by Andrey Yurchenko • 10 • updated 8 months ago by Biostar ♦♦ 20
0
votes
0
answers
308
views
0
answers
Comparing Assemblies and Breaking Inconsistent Contigs
genome quickmerge dbg2olc masurca abyss written 9 months ago by EarlyEvol • 0
0
votes
0
answers
384
views
0
answers
Abyss Error when running Collector
assembly abyss written 10 months ago by claire.morandin • 0 • updated 10 months ago by genomax ♦ 62k
2
votes
0
answers
950
views
0
answers
ABySS 1.9.0 error at bwa index step
assembly abyss written 2.6 years ago by cmstouthamer • 10 • updated 11 months ago by Biostar ♦♦ 20
0
votes
3
answers
1.5k
views
3
answers
abyss-pe reading files endlessly with se command added
assembly paired-end miseq abyss written 2.9 years ago by pepijn.kooij • 0 • updated 12 months ago by Biostar ♦♦ 20
3
votes
1
answer
452
views
1
answer
How does the memory requirements of abyss scale ?
assembly abyss written 12 months ago by lieven.sterck ♦ 3.9k • updated 12 months ago by benv • 710
1
vote
1
answer
384
views
1
answer
Is the Abyss contig and scaffold phased?
genome assembly abyss written 13 months ago by wjar6718 • 0 • updated 13 months ago by benv • 710
2
votes
0
answers
709
views
0
answers
unrecognized error in the abyss assembly software
assembly abyss written 13 months ago by xuchuan • 0
4
votes
1
answer
1.3k
views
1
answer
Assembly with mate-pairs issue
assembly abyss mate-pairs written 2.9 years ago by lieven.sterck ♦ 3.9k • updated 13 months ago by Shaun Jackman • 420
3
votes
1
answer
528
views
1
answer
SNP calling from a scaffold.fa file
fasta snp calling abyss written 14 months ago by shynilasanthi • 30 • updated 14 months ago by pfs • 250
0
votes
2
answers
573
views
2
answers
Can't find ABYSS-P after compiling
assembly abyss written 14 months ago by freuv • 20
1
vote
2
answers
817
views
2
answers
ERROR 127: ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory
assembly abyss written 14 months ago by freuv • 20
0
votes
0
answers
688
views
0
answers
Problem with Abyss 2.0
assembly abyss written 15 months ago by Pierre • 0
0
votes
0
answers
670
views
0
answers
ABySS and Velvet "number of contigs and contig length in pair-end and single-end datasets"
illumina ngs abyss velvet written 16 months ago by Abdul Rafay Khan • 910
0
votes
1
answer
657
views
1
answer
What happened after coverage.hist in Abyss?
assembly abyss written 17 months ago by wangzz.email • 0 • updated 17 months ago by Jean-Karim Heriche ♦ 18k
5
votes
1
answer
978
views
6 follow
1
answer
Running ABySS at k-mer > 97
k-mer abyss genome assembly written 17 months ago by Anand Rao • 210 • updated 17 months ago by benv • 710
4
votes
1
answer
890
views
7 follow
1
answer
ABySS run problems
de novo mpi abyss genome assembly written 18 months ago by Anand Rao • 210 • updated 18 months ago by benv • 710
3
votes
2
answers
1.1k
views
2
answers
interpretation Abyss stats
assembly next-gen abyss written 18 months ago by milanlove • 0 • updated 18 months ago by benv • 710
2
votes
2
answers
555
views
2
answers
scaffolding with n= and N=
assembly abyss written 19 months ago by jdoyle30724 • 0
7
votes
1
answer
781
views
5 follow
1
answer
Rescaffolding a genome assembly?
abyss scaffolding written 20 months ago by cmdcolin • 1.1k
3
votes
1
answer
559
views
1
answer
abyss fixmate error (but read IDs seem appropriate)
benvforthewin abyss written 20 months ago by jdoyle30724 • 0
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