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Abyss (Optimizing the parameter k)
assembly kmer abyss written 7 weeks ago by Mbillah • 100 • updated 10 days ago by Biostar ♦♦ 20
9
votes
1
answer
320
views
5 follow
1
answer
ABySS path setup for temporary files
assembly abyss written 7 weeks ago by Mbillah • 100 • updated 7 weeks ago by colindaven • 840
0
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0
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140
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0
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Abyss run time
assembly abyss written 7 weeks ago by Mbillah • 100
0
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1
answer
222
views
1
answer
Assembly with ABySS, Kmer optimisation
assembly kmer abyss written 11 weeks ago by lieven.sterck • 3.3k
0
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0
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1.4k
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0
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abyss fixmate error
abyss written 3.2 years ago by rebzi87 • 0 • updated 9 weeks ago by Biostar ♦♦ 20
3
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1
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443
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1
answer
"brew install brewsci/bio/abyss" doesn't work - no formula
abyss written 7 months ago by zhaoh • 0 • updated 12 weeks ago by Shaun Jackman • 420
1
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1
answer
134
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1
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Make error for abyss-PE with many libraries
assembly abyss written 12 weeks ago by ck178807 • 0 • updated 12 weeks ago by benv • 710
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0
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188
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0
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ABySS min = 500 ; how to change it
de novo assembly abyss sequencing written 5 months ago by philousap10 • 0
1
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2
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912
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2
answers
Bosst configure error
assembly abyss written 2.3 years ago by Andrey Yurchenko • 10 • updated 6 months ago by Biostar ♦♦ 20
0
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0
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249
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0
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Comparing Assemblies and Breaking Inconsistent Contigs
genome quickmerge dbg2olc masurca abyss written 7 months ago by EarlyEvol • 0
0
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329
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0
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Abyss Error when running Collector
assembly abyss written 8 months ago by claire.morandin • 0 • updated 8 months ago by genomax ♦ 59k
2
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0
answers
889
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0
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ABySS 1.9.0 error at bwa index step
assembly abyss written 2.5 years ago by cmstouthamer • 10 • updated 9 months ago by Biostar ♦♦ 20
0
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3
answers
1.4k
views
3
answers
abyss-pe reading files endlessly with se command added
assembly paired-end miseq abyss written 2.8 years ago by pepijn.kooij • 0 • updated 10 months ago by Biostar ♦♦ 20
3
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1
answer
405
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1
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How does the memory requirements of abyss scale ?
assembly abyss written 10 months ago by lieven.sterck • 3.3k • updated 10 months ago by benv • 710
1
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1
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347
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1
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Is the Abyss contig and scaffold phased?
genome assembly abyss written 11 months ago by wjar6718 • 0 • updated 11 months ago by benv • 710
2
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0
answers
641
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0
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unrecognized error in the abyss assembly software
assembly abyss written 11 months ago by xuchuan • 0
4
votes
1
answer
1.2k
views
1
answer
Assembly with mate-pairs issue
assembly abyss mate-pairs written 2.7 years ago by lieven.sterck • 3.3k • updated 11 months ago by Shaun Jackman • 420
3
votes
1
answer
472
views
1
answer
SNP calling from a scaffold.fa file
fasta snp calling abyss written 12 months ago by shynilasanthi • 30 • updated 12 months ago by pfs • 250
0
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2
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525
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2
answers
Can't find ABYSS-P after compiling
assembly abyss written 12 months ago by freuv • 20
1
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2
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720
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2
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ERROR 127: ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory
assembly abyss written 12 months ago by freuv • 20
0
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0
answers
617
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0
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Problem with Abyss 2.0
assembly abyss written 13 months ago by Pierre • 0
0
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0
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621
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0
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ABySS and Velvet "number of contigs and contig length in pair-end and single-end datasets"
illumina ngs abyss velvet written 14 months ago by Abdul Rafay Khan • 890
0
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1
answer
597
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1
answer
What happened after coverage.hist in Abyss?
assembly abyss written 15 months ago by wangzz.email • 0 • updated 15 months ago by Jean-Karim Heriche ♦ 17k
5
votes
1
answer
869
views
6 follow
1
answer
Running ABySS at k-mer > 97
k-mer abyss genome assembly written 15 months ago by Anand Rao • 160 • updated 15 months ago by benv • 710
4
votes
1
answer
842
views
7 follow
1
answer
ABySS run problems
de novo mpi abyss genome assembly written 16 months ago by Anand Rao • 160 • updated 16 months ago by benv • 710
3
votes
2
answers
1.0k
views
2
answers
interpretation Abyss stats
assembly next-gen abyss written 16 months ago by milanlove • 0 • updated 16 months ago by benv • 710
2
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2
answers
514
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2
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scaffolding with n= and N=
assembly abyss written 17 months ago by jdoyle30724 • 0
7
votes
1
answer
726
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5 follow
1
answer
Rescaffolding a genome assembly?
abyss scaffolding written 18 months ago by cmdcolin • 950
3
votes
1
answer
508
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1
answer
abyss fixmate error (but read IDs seem appropriate)
benvforthewin abyss written 18 months ago by jdoyle30724 • 0
5
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1
answer
825
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1
answer
Reading single-end reads takes forever
abyss written 19 months ago by RoseString • 0 • updated 19 months ago by benv • 710
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