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Andrey Yurchenko • 10
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written 11 days ago by
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Jean-Karim Heriche ♦ 12k
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written 4 months ago by
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benv • 600
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Damian Kao ♦ 14k
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Recent Replies
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A: Bash: find duplicates based on 2 columns and keep duplicate with lowest value in by
shenwei356 • 3.3k
Try this sort -d -k2,2 -k6,6n data.tsv | awk '!x[$2]++'
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A: The difference between okay.cds and okay.fasta produced by tr2aacds by
gilbert.bionet • 60
The okayset/ of files you ask about from tr2aacds contain the subset of your input transcripts t...
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A: Bash: find duplicates based on 2 columns and keep duplicate with lowest value in by
Kevin Blighe • 940
This is a somewhat cheeky way of doing it. Re-using your code, I then numerically sort the data ...
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C: How to filter SNPs after Freebayes, if at all, in a fungal haploid genome alignm by
Brian Bushnell ♦ 14k
Coverage is pretty variable so even if the average is, say, 300x I still don't see a good reason ...
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C: samtools: error while loading shared libraries: libbz2.so.1.0: cannot open share by
Devon Ryan ♦ 70k
Put `conda-forge` second, after `bioconda`.
-
A: HtSeq count error by
Ron • 600
The bam file is working fine with older HTSEQ version 0.6.1, which I was using previously. So I r...
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C: How to filter SNPs after Freebayes, if at all, in a fungal haploid genome alignm by
Lina F • 100
I have >100X coverage, so I should be ok on that front. I will take a look at IGV. Ultimately...
-
C: gene set enrichment analysis for continuous phenotype by
Ron • 600
Can you explain more on the continuous outcome?
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A: Advice on primer ordering for 16s + ITS sequencing by
samdegregori • 0
bump
-
C: Introducing FilterByTile: Remove Low-Quality Reads Without Adding Bias by
fusion.slope • 120
Hi br.m, sorry for the late reply. Basically i did a bash script removing the tiles in the red c...
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A: gc content file for human genome large and difficult to parse into separate chro by
igor • 4.5k
You can use `bedtools nuc` to get GC content at any resolution. The input BED file that defines t...
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C: Need help reading FASTQ file by
jrj.healey • 2.3k
Yeah I should probably add the caveat that I'm assuming a perfect input, but I would hope if some...
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