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2
votes
0
answers
155
views
0
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flexbar for many files
adapter flexbar rna-seq trim written 3 months ago by charadriussp • 0
4
votes
2
answers
206
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5 follow
2
answers
Trim adapter of undefined length
adapter trimming short read written 4 months ago by julia.mir • 0 • updated 4 months ago by genomax ♦ 78k
3
votes
2
answers
366
views
2
answers
How to figure out which adapter has been used
adapter trimming degradome written 11 months ago by juan.crescente • 20
1
vote
1
answer
284
views
1
answer
Trimming adapters required for local alignment?
trimming adapter ngs hicexplorer written 9 months ago by srhic • 0
5
votes
0
answers
392
views
0
answers
cutadapt low read adapters percentage
adapter rna-seq written 10 months ago by Morris_Chair • 170
5
votes
1
answer
1.2k
views
1
answer
What sequences should I use for ATAC-Seq adapter trimming using trimmomatic 0.36?
trimmomatic trimming adapter atac-seq written 11 months ago by Gary • 480 • updated 11 months ago by h.mon ♦ 29k
9
votes
2
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1.5k
views
2
answers
When do you strictly need to know the adapter sequence to trim NGS data?
trimming ngs adapter written 19 months ago by MAPK • 1.5k • updated 19 months ago by Gjain ♦ 5.4k
5
votes
1
answer
501
views
5 follow
1
answer
How do I completely get rid of adapter sequence
trimming smallrnaseq adapter written 19 months ago by MAPK • 1.5k
2
votes
1
answer
691
views
1
answer
How do you decide the minimum length for the adapter that needs trimming for small RNAseq
trimmomatic trimming smallrnaseq adapter written 19 months ago by MAPK • 1.5k
0
votes
0
answers
853
views
0
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miRNA-seq Trimmomatic adapter file
trimmomatic adapter mirna-seq written 19 months ago by inah • 20 • updated 19 months ago by WouterDeCoster ♦ 43k
11
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2
answers
1.4k
views
5 follow
2
answers
Adapter trimming of small RNAseq data
adapter smallrnaseq trimming rna-seq written 19 months ago by MAPK • 1.5k • updated 19 months ago by Brad Langhorst • 110
0
votes
0
answers
574
views
0
answers
Find adapter sequences
fasta adapter sequencing fastq fastqc written 19 months ago by science_lizard • 0
3
votes
2
answers
834
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2
answers
How to determine which adapter to use while trimming?
trimmomatic ngs fastq adapter written 19 months ago by MAPK • 1.5k • updated 19 months ago by sschmeier • 80
3
votes
1
answer
593
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1
answer
How to trim adapters from fastq having 8mer+8mer bar-code
illumina ngs fastq adapter barcode written 20 months ago by rice.researcher • 140 • updated 20 months ago by Devon Ryan ♦ 94k
0
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1
answer
503
views
1
answer
What value shoould be filled at Choose Adapter Clip adapter sequences Galaxy
adapter galaxy clip choose adapter written 20 months ago by Kian • 40 • updated 20 months ago by Devon Ryan ♦ 94k
0
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2
answers
1.9k
views
2
answers
Finding adapters in sequences
16s adapter written 23 months ago by genomics Newbie • 20 • updated 23 months ago by genomax ♦ 78k
1
vote
1
answer
1.7k
views
1
answer
trimming RNA-seq reads with adapter sequence?index? using trimmomatic
trimmomatic adapter rna-seq trim written 2.2 years ago by woongjaej • 10 • updated 2.2 years ago by Jake Warner • 800
1
vote
0
answers
867
views
0
answers
Trim read-specific adapter in paired-end reads
adapter trim written 2.3 years ago by Nicolas Rosewick ♦ 8.6k
8
votes
1
answer
1.4k
views
1
answer
Additional sequences in adapter file cause trimming problem?
trimmomatic adapter trimming bbtools written 2.5 years ago by Anand Rao • 260
4
votes
0
answers
770
views
0
answers
Trimming adapters with custom scoring
reads sequence fastq alignment adapter written 2.5 years ago by aka001 • 190
0
votes
0
answers
1.1k
views
0
answers
k-mer overrepresentation of WGS Illumina reads
k-mer trimmomatic adapter trimming fastqc written 2.5 years ago by Anand Rao • 260
5
votes
1
answer
2.0k
views
1
answer
Interpreting pre- and post-trim_galore FastQC results
illumina adapter trimming fastqc written 2.6 years ago by Anand Rao • 260 • updated 2.6 years ago by genomax ♦ 78k
0
votes
0
answers
1.1k
views
0
answers
Please advise me on PE sequencing reads prepared by NEBNex kit and Hiseq2000
illumina adapter length nebnex kit fastqc written 2.8 years ago by seta • 1.2k
2
votes
0
answers
2.3k
views
0
answers
Help with Trimmomatic 0.36 Error
trimmomatic adapter sequencing written 3.0 years ago by jrh154 • 0
3
votes
1
answer
2.1k
views
5 follow
1
answer
TrimGalore parameter form Nextera paired-end reads adapter removal
illumina adapter nextera trimming sequencing written 3.0 years ago by gundalav • 290 • updated 3.0 years ago by Devon Ryan ♦ 94k
3
votes
2
answers
2.2k
views
2
answers
Why mapping rate is low after adapter trimming paired-end data?
sequencing adapter alignment trim_galore cutadapt written 3.0 years ago by gundalav • 290 • updated 3.0 years ago by dariober ♦ 11k
5
votes
0
answers
2.9k
views
0
answers
Problems with Trimmomatic PE output files
trimmomatic adapter rna-seq fastqc written 3.1 years ago by hinkel2 • 10 • updated 3.1 years ago by genomax ♦ 78k
2
votes
2
answers
735
views
2
answers
Finding foreign sequences in an NGS experiment
ngs adapter blastn written 3.2 years ago by predeus • 1.3k • updated 3.2 years ago by Farbod • 3.3k
4
votes
2
answers
2.9k
views
2
answers
How can I deal with adapter contamination in next-gen sequencing reads?
illumina adapter next-gen sequencing written 4.4 years ago by gbdias • 80 • updated 3.4 years ago by Biostar ♦♦ 20
116
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4
answers
16k
views
4
answers
Forum: Trimming adapter sequences - is it necessary?
ngs adapter forum rna-seq written 3.4 years ago by Lars • 710 • updated 3.4 years ago by David Langenberger ♦ 9.2k
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