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Adapter trimming by Trimmomatic - Nextera Library
sequence illumina adapter next-gen written 9 weeks ago by mimi • 0 • updated 9 weeks ago by colindaven • 2.5k
2
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0
answers
491
views
0
answers
flexbar for many files
adapter flexbar rna-seq trim written 12 months ago by charadriussp • 0
4
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2
answers
348
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5 follow
2
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Trim adapter of undefined length
adapter trimming short read written 13 months ago by julia.mir • 0 • updated 13 months ago by genomax ♦ 92k
3
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2
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525
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2
answers
How to figure out which adapter has been used
adapter trimming degradome written 20 months ago by juan.crescente • 40
1
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1
answer
409
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1
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Trimming adapters required for local alignment?
trimming adapter ngs hicexplorer written 18 months ago by srhic • 20
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0
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709
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0
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cutadapt low read adapters percentage
adapter rna-seq written 19 months ago by Morris_Chair • 220
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1
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2.3k
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1
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What sequences should I use for ATAC-Seq adapter trimming using trimmomatic 0.36?
trimmomatic trimming adapter atac-seq written 21 months ago by Gary • 480 • updated 21 months ago by h.mon ♦ 31k
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2.0k
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2
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When do you strictly need to know the adapter sequence to trim NGS data?
trimming ngs adapter written 2.3 years ago by MAPK • 1.6k • updated 2.3 years ago by Gjain ♦ 5.5k
6
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1
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692
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7 follow
1
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How do I completely get rid of adapter sequence
trimming smallrnaseq adapter written 2.3 years ago by MAPK • 1.6k
2
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1
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982
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1
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How do you decide the minimum length for the adapter that needs trimming for small RNAseq
trimmomatic trimming smallrnaseq adapter written 2.4 years ago by MAPK • 1.6k
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5 follow
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miRNA-seq Trimmomatic adapter file
trimmomatic adapter mirna-seq written 2.4 years ago by inah • 20 • updated 2.4 years ago by WouterDeCoster ♦ 44k
11
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2
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1.9k
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5 follow
2
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Adapter trimming of small RNAseq data
adapter smallrnaseq trimming rna-seq written 2.4 years ago by MAPK • 1.6k • updated 2.4 years ago by Brad Langhorst • 110
0
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0
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835
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0
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Find adapter sequences
fasta adapter sequencing fastq fastqc written 2.4 years ago by science_lizard • 0
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2
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1.2k
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2
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How to determine which adapter to use while trimming?
trimmomatic ngs fastq adapter written 2.4 years ago by MAPK • 1.6k • updated 2.4 years ago by sschmeier • 80
3
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1
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766
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1
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How to trim adapters from fastq having 8mer+8mer bar-code
illumina ngs fastq adapter barcode written 2.5 years ago by rice.researcher • 150 • updated 2.5 years ago by Devon Ryan ♦ 97k
0
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1
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680
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1
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What value shoould be filled at Choose Adapter Clip adapter sequences Galaxy
adapter galaxy clip choose adapter written 2.5 years ago by Kian • 40 • updated 2.5 years ago by Devon Ryan ♦ 97k
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2
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2.4k
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2
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Finding adapters in sequences
16s adapter written 2.7 years ago by genomics Newbie • 30 • updated 2.7 years ago by genomax ♦ 92k
1
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1
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2.1k
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1
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trimming RNA-seq reads with adapter sequence?index? using trimmomatic
trimmomatic adapter rna-seq trim written 3.0 years ago by woongjaej • 10 • updated 3.0 years ago by Jake Warner • 810
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0
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1.1k
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0
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Trim read-specific adapter in paired-end reads
adapter trim written 3.1 years ago by Nicolas Rosewick ♦ 9.2k
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1
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1.7k
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1
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Additional sequences in adapter file cause trimming problem?
trimmomatic adapter trimming bbtools written 3.2 years ago by Anand Rao • 330
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862
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0
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Trimming adapters with custom scoring
reads sequence fastq alignment adapter written 3.3 years ago by aka001 • 190
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1.4k
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0
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k-mer overrepresentation of WGS Illumina reads
k-mer trimmomatic adapter trimming fastqc written 3.3 years ago by Anand Rao • 330
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1
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2.7k
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1
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Interpreting pre- and post-trim_galore FastQC results
illumina adapter trimming fastqc written 3.3 years ago by Anand Rao • 330 • updated 3.3 years ago by genomax ♦ 92k
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1.2k
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0
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Please advise me on PE sequencing reads prepared by NEBNex kit and Hiseq2000
illumina adapter length nebnex kit fastqc written 3.6 years ago by seta • 1.4k
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0
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2.8k
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0
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Help with Trimmomatic 0.36 Error
trimmomatic adapter sequencing written 3.7 years ago by jrh154 • 0
3
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1
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2.8k
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5 follow
1
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TrimGalore parameter form Nextera paired-end reads adapter removal
illumina adapter nextera trimming sequencing written 3.8 years ago by gundalav • 300 • updated 3.8 years ago by Devon Ryan ♦ 97k
3
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2
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2.6k
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2
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Why mapping rate is low after adapter trimming paired-end data?
sequencing adapter alignment trim_galore cutadapt written 3.8 years ago by gundalav • 300 • updated 3.8 years ago by dariober ♦ 11k
5
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0
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3.4k
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0
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Problems with Trimmomatic PE output files
trimmomatic adapter rna-seq fastqc written 3.9 years ago by hinkel2 • 10 • updated 3.9 years ago by genomax ♦ 92k
2
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2
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824
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2
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Finding foreign sequences in an NGS experiment
ngs adapter blastn written 3.9 years ago by predeus • 1.4k • updated 3.9 years ago by Farbod • 3.3k
4
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2
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3.1k
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2
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How can I deal with adapter contamination in next-gen sequencing reads?
illumina adapter next-gen sequencing written 5.1 years ago by gbdias • 90 • updated 4.2 years ago by Biostar ♦♦ 20
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