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121
votes
4
answers
20k
views
4
answers
Forum: Trimming adapter sequences - is it necessary?
ngs adapter forum rna-seq written 4.5 years ago by Lars • 780 • updated 1 day ago by hire.duck.design • 0
1
vote
0
answers
87
views
0
answers
fastp issue (trimming and read filtering tool)
trimming adapter fastp written 4 weeks ago by v.berriosfarias • 10
12
votes
2
answers
2.1k
views
7 follow
2
answers
Adapter trimming of small RNAseq data
adapter smallrnaseq trimming rna-seq written 2.6 years ago by MAPK • 1.7k • updated 11 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
264
views
1
answer
Adapter trimming by Trimmomatic - Nextera Library
sequence illumina adapter next-gen written 5 months ago by mimi • 0 • updated 5 months ago by colindaven • 2.6k
2
votes
0
answers
654
views
0
answers
flexbar for many files
adapter flexbar rna-seq trim written 16 months ago by charadriussp • 0
4
votes
2
answers
389
views
5 follow
2
answers
Trim adapter of undefined length
adapter trimming short read written 16 months ago by julia.mir • 0 • updated 16 months ago by GenoMax ♦ 96k
3
votes
2
answers
590
views
2
answers
How to figure out which adapter has been used
adapter trimming degradome written 23 months ago by juan.crescente • 50
1
vote
1
answer
460
views
1
answer
Trimming adapters required for local alignment?
trimming adapter ngs hicexplorer written 21 months ago by srhic • 40
5
votes
0
answers
804
views
0
answers
cutadapt low read adapters percentage
adapter rna-seq written 23 months ago by Morris_Chair • 230
6
votes
1
answer
2.8k
views
1
answer
What sequences should I use for ATAC-Seq adapter trimming using trimmomatic 0.36?
trimmomatic trimming adapter atac-seq written 2.0 years ago by Gary • 480 • updated 2.0 years ago by h.mon ♦ 32k
9
votes
2
answers
2.1k
views
2
answers
When do you strictly need to know the adapter sequence to trim NGS data?
trimming ngs adapter written 2.6 years ago by MAPK • 1.7k • updated 2.6 years ago by Gjain ♦ 5.6k
6
votes
1
answer
754
views
7 follow
1
answer
How do I completely get rid of adapter sequence
trimming smallrnaseq adapter written 2.6 years ago by MAPK • 1.7k
2
votes
1
answer
1.1k
views
1
answer
How do you decide the minimum length for the adapter that needs trimming for small RNAseq
trimmomatic trimming smallrnaseq adapter written 2.6 years ago by MAPK • 1.7k
1
vote
0
answers
1.3k
views
5 follow
0
answers
miRNA-seq Trimmomatic adapter file
trimmomatic adapter mirna-seq written 2.6 years ago by inah • 30 • updated 2.6 years ago by WouterDeCoster ♦ 45k
0
votes
0
answers
918
views
0
answers
Find adapter sequences
fasta adapter sequencing fastq fastqc written 2.6 years ago by science_lizard • 0
3
votes
2
answers
1.4k
views
2
answers
How to determine which adapter to use while trimming?
trimmomatic ngs fastq adapter written 2.6 years ago by MAPK • 1.7k • updated 2.6 years ago by sschmeier • 80
3
votes
1
answer
809
views
1
answer
How to trim adapters from fastq having 8mer+8mer bar-code
illumina ngs fastq adapter barcode written 2.7 years ago by rice.researcher • 150 • updated 2.7 years ago by Devon Ryan ♦ 98k
0
votes
1
answer
740
views
1
answer
What value shoould be filled at Choose Adapter Clip adapter sequences Galaxy
adapter galaxy clip choose adapter written 2.7 years ago by Kian • 40 • updated 2.7 years ago by Devon Ryan ♦ 98k
0
votes
2
answers
2.6k
views
2
answers
Finding adapters in sequences
16s adapter written 3.0 years ago by genomics Newbie • 50 • updated 3.0 years ago by GenoMax ♦ 96k
1
vote
1
answer
2.3k
views
1
answer
trimming RNA-seq reads with adapter sequence?index? using trimmomatic
trimmomatic adapter rna-seq trim written 3.3 years ago by woongjaej • 20 • updated 3.3 years ago by Jake Warner • 810
1
vote
0
answers
1.2k
views
0
answers
Trim read-specific adapter in paired-end reads
adapter trim written 3.3 years ago by Nicolas Rosewick ♦ 9.3k
8
votes
1
answer
1.8k
views
1
answer
Additional sequences in adapter file cause trimming problem?
trimmomatic adapter trimming bbtools written 3.5 years ago by Anand Rao • 350
4
votes
0
answers
897
views
0
answers
Trimming adapters with custom scoring
reads sequence fastq alignment adapter written 3.6 years ago by aka001 • 190
0
votes
0
answers
1.4k
views
0
answers
k-mer overrepresentation of WGS Illumina reads
k-mer trimmomatic adapter trimming fastqc written 3.6 years ago by Anand Rao • 350
5
votes
1
answer
2.9k
views
1
answer
Interpreting pre- and post-trim_galore FastQC results
illumina adapter trimming fastqc written 3.6 years ago by Anand Rao • 350 • updated 3.6 years ago by GenoMax ♦ 96k
0
votes
0
answers
1.2k
views
0
answers
Please advise me on PE sequencing reads prepared by NEBNex kit and Hiseq2000
illumina adapter length nebnex kit fastqc written 3.9 years ago by seta • 1.4k
2
votes
0
answers
2.9k
views
0
answers
Help with Trimmomatic 0.36 Error
trimmomatic adapter sequencing written 4.0 years ago by jrh154 • 0
3
votes
1
answer
3.0k
views
5 follow
1
answer
TrimGalore parameter form Nextera paired-end reads adapter removal
illumina adapter nextera trimming sequencing written 4.1 years ago by gundalav • 310 • updated 4.1 years ago by Devon Ryan ♦ 98k
3
votes
2
answers
2.7k
views
2
answers
Why mapping rate is low after adapter trimming paired-end data?
sequencing adapter alignment trim_galore cutadapt written 4.1 years ago by gundalav • 310 • updated 4.1 years ago by dariober ♦ 11k
5
votes
0
answers
3.6k
views
0
answers
Problems with Trimmomatic PE output files
trimmomatic adapter rna-seq fastqc written 4.1 years ago by hinkel2 • 10 • updated 4.1 years ago by GenoMax ♦ 96k
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