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<prev • 44 results • page 1 of 2 • next >
2
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0
answers
72
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flexbar for many files
adapter flexbar rna-seq trim written 17 days ago by charadriussp • 0
4
votes
2
answers
136
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5 follow
2
answers
Trim adapter of undefined length
adapter trimming short read written 4 weeks ago by julia.mir • 0 • updated 29 days ago by genomax ♦ 74k
3
votes
2
answers
311
views
2
answers
How to figure out which adapter has been used
adapter trimming degradome written 8 months ago by juan.crescente • 20
1
vote
1
answer
227
views
1
answer
Trimming adapters required for local alignment?
trimming adapter ngs hicexplorer written 6 months ago by srhic • 0
5
votes
0
answers
290
views
0
answers
cutadapt low read adapters percentage
adapter rna-seq written 7 months ago by Morris_Chair • 150
5
votes
1
answer
932
views
1
answer
What sequences should I use for ATAC-Seq adapter trimming using trimmomatic 0.36?
trimmomatic trimming adapter atac-seq written 8 months ago by Gary • 470 • updated 8 months ago by h.mon ♦ 28k
9
votes
2
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1.3k
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2
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When do you strictly need to know the adapter sequence to trim NGS data?
trimming ngs adapter written 16 months ago by MAPK • 1.5k • updated 16 months ago by Gjain ♦ 5.4k
5
votes
1
answer
452
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5 follow
1
answer
How do I completely get rid of adapter sequence
trimming smallrnaseq adapter written 16 months ago by MAPK • 1.5k
2
votes
1
answer
591
views
1
answer
How do you decide the minimum length for the adapter that needs trimming for small RNAseq
trimmomatic trimming smallrnaseq adapter written 16 months ago by MAPK • 1.5k
0
votes
0
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763
views
0
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miRNA-seq Trimmomatic adapter file
trimmomatic adapter mirna-seq written 16 months ago by inah • 20 • updated 16 months ago by WouterDeCoster ♦ 42k
11
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2
answers
1.2k
views
5 follow
2
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Adapter trimming of small RNAseq data
adapter smallrnaseq trimming rna-seq written 16 months ago by MAPK • 1.5k • updated 16 months ago by Brad Langhorst • 110
0
votes
0
answers
502
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0
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Find adapter sequences
fasta adapter sequencing fastq fastqc written 16 months ago by science_lizard • 0
3
votes
2
answers
742
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2
answers
How to determine which adapter to use while trimming?
trimmomatic ngs fastq adapter written 16 months ago by MAPK • 1.5k • updated 16 months ago by sschmeier • 80
3
votes
1
answer
523
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1
answer
How to trim adapters from fastq having 8mer+8mer bar-code
illumina ngs fastq adapter barcode written 17 months ago by rice.researcher • 140 • updated 17 months ago by Devon Ryan ♦ 92k
0
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1
answer
459
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1
answer
What value shoould be filled at Choose Adapter Clip adapter sequences Galaxy
adapter galaxy clip choose adapter written 17 months ago by Kian • 40 • updated 17 months ago by Devon Ryan ♦ 92k
0
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2
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1.7k
views
2
answers
Finding adapters in sequences
16s adapter written 20 months ago by genomics Newbie • 20 • updated 20 months ago by genomax ♦ 74k
1
vote
1
answer
1.5k
views
1
answer
trimming RNA-seq reads with adapter sequence?index? using trimmomatic
trimmomatic adapter rna-seq trim written 23 months ago by woongjaej • 10 • updated 23 months ago by Jake Warner • 770
1
vote
0
answers
774
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0
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Trim read-specific adapter in paired-end reads
adapter trim written 2.0 years ago by Nicolas Rosewick ♦ 8.4k
8
votes
1
answer
1.3k
views
1
answer
Additional sequences in adapter file cause trimming problem?
trimmomatic adapter trimming bbtools written 2.2 years ago by Anand Rao • 250
4
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0
answers
739
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0
answers
Trimming adapters with custom scoring
reads sequence fastq alignment adapter written 2.3 years ago by aka001 • 190
0
votes
0
answers
1.0k
views
0
answers
k-mer overrepresentation of WGS Illumina reads
k-mer trimmomatic adapter trimming fastqc written 2.3 years ago by Anand Rao • 250
5
votes
1
answer
1.9k
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1
answer
Interpreting pre- and post-trim_galore FastQC results
illumina adapter trimming fastqc written 2.3 years ago by Anand Rao • 250 • updated 2.3 years ago by genomax ♦ 74k
0
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0
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1.0k
views
0
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Please advise me on PE sequencing reads prepared by NEBNex kit and Hiseq2000
illumina adapter length nebnex kit fastqc written 2.6 years ago by seta • 1.2k
2
votes
0
answers
2.1k
views
0
answers
Help with Trimmomatic 0.36 Error
trimmomatic adapter sequencing written 2.7 years ago by jrh154 • 0
3
votes
1
answer
2.0k
views
5 follow
1
answer
TrimGalore parameter form Nextera paired-end reads adapter removal
illumina adapter nextera trimming sequencing written 2.8 years ago by gundalav • 290 • updated 2.8 years ago by Devon Ryan ♦ 92k
3
votes
2
answers
2.0k
views
2
answers
Why mapping rate is low after adapter trimming paired-end data?
sequencing adapter alignment trim_galore cutadapt written 2.8 years ago by gundalav • 290 • updated 2.8 years ago by dariober ♦ 10k
5
votes
0
answers
2.7k
views
0
answers
Problems with Trimmomatic PE output files
trimmomatic adapter rna-seq fastqc written 2.9 years ago by hinkel2 • 10 • updated 2.9 years ago by genomax ♦ 74k
2
votes
2
answers
698
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2
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Finding foreign sequences in an NGS experiment
ngs adapter blastn written 2.9 years ago by predeus • 1.3k • updated 2.9 years ago by Farbod • 3.3k
4
votes
2
answers
2.8k
views
2
answers
How can I deal with adapter contamination in next-gen sequencing reads?
illumina adapter next-gen sequencing written 4.1 years ago by gbdias • 80 • updated 3.2 years ago by Biostar ♦♦ 20
113
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4
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15k
views
4
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Forum: Trimming adapter sequences - is it necessary?
ngs adapter forum rna-seq written 3.2 years ago by Lars • 680 • updated 3.2 years ago by David Langenberger ♦ 9.1k
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