Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 28 results • page 1 of 1 • next >
4
votes
1
answer
954
views
1
answer
Adapter trimming before mapping with Salmon
adapters salmon rna-seq written 11 months ago by justinjacobse • 0 • updated 11 months ago by igor ♦ 11k
9
votes
2
answers
1.4k
views
6 follow
2
answers
mRNA-seq quality report (fastQC): Does it mean samples have adapters and should remove duplicates?
adapters duplicates rna-seq fastqc written 2.1 years ago by salamandra • 320 • updated 15 months ago by Biostar ♦♦ 20
7
votes
4
answers
616
views
8 follow
4
answers
General question about batch effect, read trimming and what to do when the adapter trimming step is not working appropriately.
trimmomatic adapters trimming rna-seq written 16 months ago by Mozart • 200 • updated 15 months ago by swbarnes2 ♦ 8.2k
1
vote
2
answers
551
views
2
answers
Sequencing (+1bp in length?) and adaptor trimming.
adapters rna-seq sequencing written 16 months ago by Biogeek • 400 • updated 16 months ago by genomax ♦ 87k
1
vote
1
answer
1.9k
views
1
answer
Novaseq 6000 paired end data Trimming and clipping
novaseq adapters trimming rna-seq filtering written 17 months ago by ignazio.fontana • 0
3
votes
1
answer
642
views
1
answer
max length in cutadapt
adapters rna-seq sequencing written 18 months ago by max_19 • 150 • updated 18 months ago by Devon Ryan ♦ 96k
5
votes
1
answer
577
views
1
answer
Small RNAseq data with untrimmed reads left after trimming process
adapters trimming smallrnaseq rna-seq written 2.1 years ago by MAPK • 1.6k • updated 2.1 years ago by h.mon ♦ 30k
3
votes
0
answers
1.2k
views
0
answers
Leftover adapter sequences after Trimmomatic trimming?
trimmomatic adapters trimming rna-seq written 2.1 years ago by annsun89 • 30 • updated 2.1 years ago by genomax ♦ 87k
11
votes
0
answers
4.9k
views
6 follow
0
answers
Which truseq trimmomatic adapters file to use when removing truseq adapters?
adapters trimmomatic rna-seq written 2.1 years ago by salamandra • 320
7
votes
1
answer
1.9k
views
1
answer
Does adapter removal (with trimmomatic) also remove barcodes?
adapters barcodes rna-seq written 2.1 years ago by salamandra • 320 • updated 2.1 years ago by swbarnes2 ♦ 8.2k
3
votes
2
answers
854
views
2
answers
Remaining adapters ?
adapters rna-seq written 2.7 years ago by Sharon • 480 • updated 2.7 years ago by Biostar ♦♦ 20
0
votes
0
answers
745
views
0
answers
is necessary to remove TruSeq index adapter with low percent and present in one read?
adapters paired-end quality control rna-seq written 2.8 years ago by Lila M • 820
0
votes
1
answer
1.6k
views
1
answer
auto trimming of adapter and 6 base normalizing sequence from miRNA reads
adapters trimming microrna written 4.7 years ago by Richard • 570 • updated 2.8 years ago by Biostar ♦♦ 20
2
votes
0
answers
1.2k
views
0
answers
What is the acceptable percentage of reads with adapters sequenced in miRNA sequencing?
adapters reads smallrna rna-seq mirna written 2.9 years ago by bioinforesearchquestions • 280
2
votes
2
answers
1.2k
views
2
answers
Tool For Counting Adapter Dimer: I need metrics NOT trimming
adapter dimer adapters trimming dna primer dimer written 3.0 years ago by jnowacki • 70 • updated 3.0 years ago by chen • 2.1k
3
votes
2
answers
1.1k
views
2
answers
Public datasets with UMI
adapters umi sequencing written 3.2 years ago by ognjen011 • 200
3
votes
1
answer
1.6k
views
1
answer
FastQC and adapters
adapters quality sequence sequencing written 3.3 years ago by ognjen011 • 200 • updated 3.3 years ago by mastal511 • 2.0k
2
votes
0
answers
691
views
0
answers
What are the adapters in illumina platinium genomes?
adapters assembly sequencing written 3.5 years ago by dasdevashishdas • 120
1
vote
1
answer
1.1k
views
1
answer
Custom sequences vs supplied sequences in trimmomatric
adapters trimmomatic trimming written 3.5 years ago by ofonov • 0 • updated 3.5 years ago by shunyip • 190
3
votes
1
answer
1.8k
views
1
answer
How can I remove adapter sequence from illumina 2000 paired end data?
adapters cutadapt illumina pe trimgalore fastqc written 3.9 years ago by tcf.hcdg • 60 • updated 3.9 years ago by Brian Bushnell ♦ 17k
0
votes
1
answer
2.0k
views
1
answer
Trimming adapters of Hiseq2000 pair end reads
adapters rna-seq written 4.2 years ago by Emma • 10 • updated 4.2 years ago by Carlo Yague • 5.0k
7
votes
2
answers
8.4k
views
2
answers
Where to get list of all Illumina adapters
adapters illumina rna-seq cutadapt written 4.5 years ago by umn_bist • 380 • updated 4.5 years ago by Juke34 • 4.5k
0
votes
1
answer
4.4k
views
1
answer
Understanding Illumina Adapters
adapters illumina oligos written 4.8 years ago by irritable_phd_syndrom • 70 • updated 4.8 years ago by jotan • 1.2k
3
votes
1
answer
2.3k
views
1
answer
Per base sequence quality before and after truseq adapters removal
adapters illumina removal truseq written 4.8 years ago by cristianrohr768 • 30 • updated 4.8 years ago by harold.smith.tarheel • 4.6k
0
votes
2
answers
4.6k
views
2
answers
Removing barcode and adapters?
adapters sequencing written 5.1 years ago by manekineko • 130
2
votes
1
answer
5.4k
views
1
answer
Illumina adapter identification
adapters illumina rna-seq written 5.7 years ago by Jonathan Crowther • 200 • updated 5.7 years ago by geek_y ♦ 11k
9
votes
1
answer
2.6k
views
1
answer
Mate pair Illumina reads - recommended mapper of choice, adapter removal and PE contamination
adapters illumina insert size mate pair mapper written 5.8 years ago by Biomonika (Noolean) ♦ 3.1k • updated 5.8 years ago by 14134125465346445 • 3.5k
6
votes
1
answer
2.5k
views
1
answer
Remove Illumina Adapters
adapters illumina primers remove written 6.3 years ago by K.Nijbroek • 100 • updated 6.3 years ago by Istvan Albert ♦♦ 84k
<prev • 28 results • page 1 of 1 • next >
Recent Votes
Recent Locations • All »
  • Russian Federation, 2 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1780 users visited in the last hour