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4
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1
answer
594
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1
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Adapter trimming before mapping with Salmon
adapters salmon rna-seq written 7 months ago by justinjacobse • 0 • updated 7 months ago by igor ♦ 9.9k
9
votes
2
answers
1.1k
views
6 follow
2
answers
mRNA-seq quality report (fastQC): Does it mean samples have adapters and should remove duplicates?
adapters duplicates rna-seq fastqc written 21 months ago by salamandra • 280 • updated 10 months ago by Biostar ♦♦ 20
7
votes
4
answers
499
views
8 follow
4
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General question about batch effect, read trimming and what to do when the adapter trimming step is not working appropriately.
trimmomatic adapters trimming rna-seq written 11 months ago by Mozart • 140 • updated 11 months ago by swbarnes2 ♦ 7.5k
1
vote
2
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454
views
2
answers
Sequencing (+1bp in length?) and adaptor trimming.
adapters rna-seq sequencing written 12 months ago by Biogeek • 380 • updated 12 months ago by genomax ♦ 80k
1
vote
1
answer
1.4k
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1
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Novaseq 6000 paired end data Trimming and clipping
novaseq adapters trimming rna-seq filtering written 12 months ago by ignazio.fontana • 0
3
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1
answer
509
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1
answer
max length in cutadapt
adapters rna-seq sequencing written 14 months ago by max_19 • 130 • updated 14 months ago by Devon Ryan ♦ 94k
5
votes
1
answer
511
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1
answer
Small RNAseq data with untrimmed reads left after trimming process
adapters trimming smallrnaseq rna-seq written 20 months ago by MAPK • 1.5k • updated 20 months ago by h.mon ♦ 29k
2
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0
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1.0k
views
0
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Leftover adapter sequences after Trimmomatic trimming?
trimmomatic adapters trimming rna-seq written 21 months ago by annsun89 • 20 • updated 21 months ago by genomax ♦ 80k
11
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0
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3.7k
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6 follow
0
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Which truseq trimmomatic adapters file to use when removing truseq adapters?
adapters trimmomatic rna-seq written 21 months ago by salamandra • 280
7
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1
answer
1.5k
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1
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Does adapter removal (with trimmomatic) also remove barcodes?
adapters barcodes rna-seq written 21 months ago by salamandra • 280 • updated 21 months ago by swbarnes2 ♦ 7.5k
3
votes
2
answers
774
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2
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Remaining adapters ?
adapters rna-seq written 2.4 years ago by Sharon • 460 • updated 2.3 years ago by Biostar ♦♦ 20
0
votes
0
answers
687
views
0
answers
is necessary to remove TruSeq index adapter with low percent and present in one read?
adapters paired-end quality control rna-seq written 2.4 years ago by Lila M • 810
0
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1
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1.5k
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1
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auto trimming of adapter and 6 base normalizing sequence from miRNA reads
adapters trimming microrna written 4.3 years ago by Richard • 570 • updated 2.5 years ago by Biostar ♦♦ 20
2
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0
answers
1.1k
views
0
answers
What is the acceptable percentage of reads with adapters sequenced in miRNA sequencing?
adapters reads smallrna rna-seq mirna written 2.6 years ago by bioinforesearchquestions • 270
2
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2
answers
1.0k
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2
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Tool For Counting Adapter Dimer: I need metrics NOT trimming
adapter dimer adapters trimming dna primer dimer written 2.7 years ago by jnowacki • 70 • updated 2.7 years ago by chen • 2.0k
3
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2
answers
1.0k
views
2
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Public datasets with UMI
adapters umi sequencing written 2.9 years ago by ognjen011 • 200
3
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1
answer
1.5k
views
1
answer
FastQC and adapters
adapters quality sequence sequencing written 2.9 years ago by ognjen011 • 200 • updated 2.9 years ago by mastal511 • 2.0k
2
votes
0
answers
650
views
0
answers
What are the adapters in illumina platinium genomes?
adapters assembly sequencing written 3.1 years ago by dasdevashishdas • 120
1
vote
1
answer
1.0k
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1
answer
Custom sequences vs supplied sequences in trimmomatric
adapters trimmomatic trimming written 3.2 years ago by ofonov • 0 • updated 3.2 years ago by shunyip • 180
3
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1
answer
1.7k
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1
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How can I remove adapter sequence from illumina 2000 paired end data?
adapters cutadapt illumina pe trimgalore fastqc written 3.5 years ago by tcf.hcdg • 60 • updated 3.5 years ago by Brian Bushnell ♦ 17k
0
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1
answer
1.9k
views
1
answer
Trimming adapters of Hiseq2000 pair end reads
adapters rna-seq written 3.8 years ago by Emma • 10 • updated 3.8 years ago by Carlo Yague • 4.9k
7
votes
2
answers
7.9k
views
2
answers
Where to get list of all Illumina adapters
adapters illumina rna-seq cutadapt written 4.2 years ago by umn_bist • 370 • updated 4.2 years ago by Juke-34 • 3.7k
0
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1
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4.1k
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1
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Understanding Illumina Adapters
adapters illumina oligos written 4.4 years ago by irritable_phd_syndrom • 70 • updated 4.4 years ago by jotan • 1.2k
3
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1
answer
2.2k
views
1
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Per base sequence quality before and after truseq adapters removal
adapters illumina removal truseq written 4.4 years ago by cristianrohr768 • 30 • updated 4.4 years ago by harold.smith.tarheel • 4.5k
0
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2
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4.3k
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2
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Removing barcode and adapters?
adapters sequencing written 4.7 years ago by manekineko • 130
2
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1
answer
5.3k
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1
answer
Illumina adapter identification
adapters illumina rna-seq written 5.3 years ago by Jonathan Crowther • 200 • updated 5.3 years ago by geek_y ♦ 10k
9
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1
answer
2.5k
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1
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Mate pair Illumina reads - recommended mapper of choice, adapter removal and PE contamination
adapters illumina insert size mate pair mapper written 5.4 years ago by Biomonika (Noolean) ♦ 3.1k • updated 5.4 years ago by 14134125465346445 • 3.5k
5
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1
answer
2.2k
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1
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Remove Illumina Adapters
adapters illumina primers remove written 5.9 years ago by K.Nijbroek • 100 • updated 5.9 years ago by Istvan Albert ♦♦ 83k
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