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3
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3
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123
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6 follow
3
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General question about batch effect, read trimming and what to do when the adapter trimming step is not working appropriately.
trimmomatic adapters trimming rna-seq written 10 days ago by Mozart • 110
1
vote
2
answers
110
views
2
answers
Sequencing (+1bp in length?) and adaptor trimming.
adapters rna-seq sequencing written 27 days ago by Biogeek • 350 • updated 27 days ago by genomax ♦ 65k
0
votes
1
answer
223
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1
answer
Novaseq 6000 paired end data Trimming and clipping
novaseq adapters trimming rna-seq filtering written 6 weeks ago by ignazio.fontana • 0
3
votes
1
answer
207
views
1
answer
max length in cutadapt
adapters rna-seq sequencing written 10 weeks ago by max_19 • 50 • updated 10 weeks ago by Devon Ryan ♦ 89k
5
votes
1
answer
311
views
1
answer
Small RNAseq data with untrimmed reads left after trimming process
adapters trimming smallrnaseq rna-seq written 9 months ago by MAPK • 1.4k • updated 9 months ago by h.mon ♦ 24k
1
vote
0
answers
569
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0
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Leftover adapter sequences after Trimmomatic trimming?
trimmomatic adapters trimming rna-seq written 9 months ago by annsun89 • 10 • updated 9 months ago by genomax ♦ 65k
8
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0
answers
1.5k
views
0
answers
Which truseq trimmomatic adapters file to use when removing truseq adapters?
adapters trimmomatic rna-seq written 10 months ago by salamandra • 200
7
votes
1
answer
751
views
1
answer
Does adapter removal (with trimmomatic) also remove barcodes?
adapters barcodes rna-seq written 10 months ago by salamandra • 200 • updated 10 months ago by swbarnes2 ♦ 5.3k
6
votes
2
answers
545
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5 follow
2
answers
mRNA-seq quality report (fastQC): Does it mean samples have adapters and should remove duplicates?
adapters duplicates rna-seq fastqc written 10 months ago by salamandra • 200 • updated 10 months ago by Charles Warden ♦ 6.6k
3
votes
2
answers
571
views
2
answers
Remaining adapters ?
adapters rna-seq written 17 months ago by Sharon • 420 • updated 16 months ago by Biostar ♦♦ 20
0
votes
0
answers
511
views
0
answers
is necessary to remove TruSeq index adapter with low percent and present in one read?
adapters paired-end quality control rna-seq written 18 months ago by Lila M • 470
0
votes
1
answer
1.2k
views
1
answer
auto trimming of adapter and 6 base normalizing sequence from miRNA reads
adapters trimming microrna written 3.4 years ago by Richard • 550 • updated 18 months ago by Biostar ♦♦ 20
2
votes
0
answers
821
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0
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What is the acceptable percentage of reads with adapters sequenced in miRNA sequencing?
adapters reads smallrna rna-seq mirna written 19 months ago by bioinforesearchquestions • 200
2
votes
2
answers
700
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2
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Tool For Counting Adapter Dimer: I need metrics NOT trimming
adapter dimer adapters trimming dna primer dimer written 21 months ago by jnowacki • 70 • updated 21 months ago by chen • 1.8k
3
votes
2
answers
716
views
2
answers
Public datasets with UMI
adapters umi sequencing written 23 months ago by ognjen011 • 160
3
votes
1
answer
1.0k
views
1
answer
FastQC and adapters
adapters quality sequence sequencing written 23 months ago by ognjen011 • 160 • updated 23 months ago by mastal511 • 2.0k
2
votes
0
answers
531
views
0
answers
What are the adapters in illumina platinium genomes?
adapters assembly sequencing written 2.2 years ago by dasdevashishdas • 120
1
vote
1
answer
818
views
1
answer
Custom sequences vs supplied sequences in trimmomatric
adapters trimmomatic trimming written 2.2 years ago by ofonov • 0 • updated 2.2 years ago by shunyip • 180
3
votes
1
answer
1.3k
views
1
answer
How can I remove adapter sequence from illumina 2000 paired end data?
adapters cutadapt illumina pe trimgalore fastqc written 2.6 years ago by tcf.hcdg • 60 • updated 2.6 years ago by Brian Bushnell ♦ 16k
0
votes
1
answer
1.6k
views
1
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Trimming adapters of Hiseq2000 pair end reads
adapters rna-seq written 2.9 years ago by Emma • 10 • updated 2.9 years ago by Carlo Yague • 4.4k
6
votes
2
answers
6.3k
views
2
answers
Where to get list of all Illumina adapters
adapters illumina rna-seq cutadapt written 3.2 years ago by umn_bist • 320 • updated 3.2 years ago by Juke-34 • 2.1k
0
votes
1
answer
3.4k
views
1
answer
Understanding Illumina Adapters
adapters illumina oligos written 3.5 years ago by irritable_phd_syndrom • 60 • updated 3.5 years ago by jotan • 1.2k
3
votes
1
answer
1.3k
views
1
answer
Per base sequence quality before and after truseq adapters removal
adapters illumina removal truseq written 3.5 years ago by cristianrohr768 • 30 • updated 3.5 years ago by harold.smith.tarheel • 4.3k
0
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2
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3.5k
views
2
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Removing barcode and adapters?
adapters sequencing written 3.8 years ago by manekineko • 130
2
votes
1
answer
4.8k
views
1
answer
Illumina adapter identification
adapters illumina rna-seq written 4.4 years ago by Jonathan Crowther • 180 • updated 4.4 years ago by geek_y ♦ 9.4k
9
votes
1
answer
2.2k
views
1
answer
Mate pair Illumina reads - recommended mapper of choice, adapter removal and PE contamination
adapters illumina insert size mate pair mapper written 4.5 years ago by Biomonika (Noolean) ♦ 3.0k • updated 4.5 years ago by 14134125465346445 • 3.4k
5
votes
1
answer
1.7k
views
1
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Remove Illumina Adapters
adapters illumina primers remove written 5.0 years ago by K.Nijbroek • 100 • updated 5.0 years ago by Istvan Albert ♦♦ 80k
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