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Forum: AddHealth Omics Data Source

forum addhealthomics written 20 months ago by belevitt • 0 • updated 20 months ago by WouterDeCoster ♦ 44k

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Recent Replies

C: how to find snp changes between pairs of samples that have genomes sequenced by genomax ♦ 87k
Here is an outline of what you can do: 1. Get original fastq sequence for samples from EBI 2. ...
C: METAPHLAN: Relative abundance to read count by dpc • 140
Yes. I got the answer. Actually I asked if we can calculate the Shannon diversity index from this...
C: How can I remove the outliers from a boxplot and fill the groups? by dpc • 140
Thanks Sir, @Antonio. Yes, I am aware about the notched boxplot :) . Only, concern was "fill" the...
C: Check programmaticaly if a protein is mitochondrial with annotations by antonioggsousa • 810
Hi, The only thing that I can think of and you can do, but not sure if is feasible neither the ...
A: How can I remove the outliers from a boxplot and fill the groups? by antonioggsousa • 810
Hi @dpc, To have a notched boxplot (I believe this is the right term for the figure that you wa...
A: problem installing rtracklayer by h.mon ♦ 30k
One alternative is to use the [conda][1] package manager to install R and its packages, conda wil...
C: problem installing rtracklayer by RamRS ♦ 28k
What happens when you try `install.packages("RCurl")`?
C: Loop in R script by RamRS ♦ 28k
"Please help me fix this" is a lot better than "Would you please fix this" - there is no need to ...
C: How can I remove the outliers from a boxplot and fill the groups? by cpad0112 ♦ 13k
`outlier.shape = NA` for ggplot to hide outliers. Try changing `notch.width` values.
C: METAPHLAN: Relative abundance to read count by antonioggsousa • 810
Hi @dpc, I received a message at this post from you, but I can't find it. The message was: ...
C: How to extract out specific distances from a distance matrix? by antonioggsousa • 810
Thank you RamRS! Next time I add a image, I'll follow these instructions. António
C: Loop in R script by Seq225 • 90
I have edited my question. Is it acceptable now?

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