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<prev • 36 results • page 1 of 2 • next >
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how to generate .pop file to run ADMIXTURE
.pop files run admixture admixture written 4 hours ago by c_barbarosie • 0
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Can somebody help use my raw data+1000genomes (or any other database) to try and prove my japanese ancestry?
23andme raw data admixture population genetics written 2.8 years ago by CJ1994 • 0 • updated 20 days ago by Biostar ♦♦ 20
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Should replicate analyses of ADMIXTURE all have the same cross-validation values
admixture written 18 months ago by devenvyas • 340 • updated 6 weeks ago by Santiago Montero-Mendieta • 70
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Convert and filter VCF by a pre-existing BIM
vcf admixture plink written 7 weeks ago by jlawlor • 0 • updated 7 weeks ago by chrchang523 • 2.4k
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Converting a big SNP genotype table to plink (.ped) file for ADMIXTURE
perl snp admixture plink ped format written 8 weeks ago by Santiago Montero-Mendieta • 70 • updated 7 weeks ago by Philipp Bayer ♦ 4.5k
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Power of ADMXITURE mapping
gwas admixture power written 5 months ago by JM88 • 280 • updated 3 months ago by Petr Ponomarenko • 2.4k
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Admixture cv error
cv error rates admixture structure written 16 months ago by s.bourne • 0 • updated 4 months ago by blair.chr • 0
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Running R for an individual; checking admixture
R admixture plink individual written 5 months ago by beneficii • 20
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Problem using plink file with ADMIXTURE
genome admixture plink linux written 5 months ago by beneficii • 20 • updated 5 months ago by Philipp Bayer ♦ 4.5k
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ADMIXTURE: "Invalid chromosome code. Use integers!"
genome admixture written 5 months ago by beneficii • 20
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Checking admixture with VCF and BAM files
admixture human written 5 months ago by beneficii • 20
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How to order Admixture (ancestry) plot in R
R admixture q plot written 6 months ago by beausoleilmo • 80 • updated 6 months ago by Joseph Hughes • 2.1k
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Can't figure out order of output rows in ADMIXTURE
admixture written 8 months ago by jenn.drummond • 20 • updated 6 months ago by beausoleilmo • 80
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Help making ADMIXTURE output digestible
admixture written 24 months ago by devenvyas • 340 • updated 6 months ago by beausoleilmo • 80
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ADMIXTURE, size of .bed file not matching number of individuals in analysis
admixture written 6 months ago by beausoleilmo • 80
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Estimating heritability using GCTA or LDAK in an admixed population
heritability admixture gcta written 9 months ago by JM88 • 280
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Placing labels in the plot
R label admixture plot written 11 months ago by akang • 90
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Correcting for multiple testing in Admixture Mapping in Latinos
genome gwas admixture written 12 months ago by JM88 • 280
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CV error in admixture and submiting the job on the cluster
human population genetics cv error admixture hpc written 13 months ago by dirranrak • 10
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Admixture cv = -nan
software error sequence admixture snp written 15 months ago by jcolella.jc • 0
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Generating an ADMIXTURE plot that stacks the different values of K using R
R admixture written 17 months ago by devenvyas • 340 • updated 17 months ago by vchris_ngs • 3.6k
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Why is my ADMIXTURE random seed always 43
admixture written 18 months ago by devenvyas • 340 • updated 18 months ago by Chris Miller ♦ 18k
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Perplexing ADMIXTURE results - one component present at K =10 disappears at 11, reappears at 12
admixture snp written 18 months ago by devenvyas • 340
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F3 test for admixture
f3-test treeness admixture written 19 months ago by abascalfederico • 960 • updated 19 months ago by Biostar ♦♦ 20
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Formulating the best imputation strategy for multiple GWAS chips in an admixed population
gwas imputation admixture meta analysis written 20 months ago by Vincent Laufer • 870
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Standard error of cross-validation estimates in software ADMIXTURE
admixture written 21 months ago by manfred.mayer5 • 0
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Looking for a quick way of consistently order components between different ADMIXTURE analyses
admixture written 22 months ago by devenvyas • 340
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Change output name for ADMIXTURE analysis
admixture written 22 months ago by devenvyas • 340
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admixture mapping of african americans
admixture structure written 22 months ago by PJ8900 • 0
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What is a bad lowest-CV value for Admixture?
cv admixture snp written 23 months ago by devenvyas • 340 • updated 23 months ago by Vincent Laufer • 870
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